Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c06
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   3.8  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    26   3.8  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   5.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   5.0  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   6.6  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   8.7  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 120 RDKEREREAEKFNVNTELNNWLDVTLACQPAP 215
           RDK    E E   + TELN+W  +     P P
Sbjct: 288 RDKVATLELENEKIQTELNSWKSLITNELPTP 319


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 261 SGADSRAKLSVSCTSLVPADKPRLH 187
           +G  S AK      SLVPADK +LH
Sbjct: 91  AGLSSVAKTRRELASLVPADKFKLH 115


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 278 LSWNAHQGRTLAPSCPSHVPVWCRLTSQGYIEPVVQLRI 162
           +SW+      L  S  S + VW   T +GY+ P V+  +
Sbjct: 106 ISWSPSGELLLWSSFDSKITVWSLNTQKGYLLPHVKTNV 144


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 171 LNNWLDVTLACQPAPNWYMRRTAWRESPPLMGVPRQLAAGLRASVQLTN 317
           L  W    L    AP   + +  W+ +   MG+   L AG   SV+L N
Sbjct: 708 LTKWYPTRLPDHMAPMESINQILWKPTFETMGLYSLLIAGEDTSVRLLN 756


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 412 NNSVINTKIEHYKRLSQS*DRTEGILKMNIGLLVSCTEALSPAASC 275
           +   +NT +EHYK +  + D+ E    +N    +   +  +PA+ C
Sbjct: 67  SQKALNTFVEHYKYVPGTYDKPESFEMLN---SIIAEKETAPASEC 109


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +2

Query: 158 CEYGVEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSAAD 313
           C YGV + A   L       +  ETDS A +       +    +T+ F   D
Sbjct: 44  CTYGVNEQAVQLLEEPLSRPITRETDSSAHQETRTRLEENNLPKTQKFGFVD 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,195
Number of Sequences: 5004
Number of extensions: 33377
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)