Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20c06
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1665 - 35164114-35164188,35164361-35164415,35164535-351648... 30 0.94
08_02_1195 - 25149891-25151402,25152194-25152493 29 2.2
12_02_0251 + 16436846-16438237 29 2.9
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 5.0
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 5.0
01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955 28 5.0
12_02_0103 - 13630229-13630335,13631608-13631703,13631796-13632036 27 6.6
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832... 27 6.6
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 27 6.6
04_01_0481 - 6302066-6303118 27 8.8
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 8.8
>04_04_1665 -
35164114-35164188,35164361-35164415,35164535-35164844,
35165401-35165521,35165701-35165796,35166163-35166266,
35167368-35167485
Length = 292
Score = 30.3 bits (65), Expect = 0.94
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 78 RFRATSPTRRPKRCRDKEREREAEKFNVNTELNNWLDVTLACQP 209
RFR T ++R + C D + E E E N+ + + + AC P
Sbjct: 198 RFRRTGESKRERVCSDSDDENEDETTNIGSHAHRAILGLPACGP 241
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 278 LSWNAHQGRTLAPSCPSHVPVWCRLTSQGYIEPVVQLRIHIKFFC 144
+S + R+LA S + +PV + +G+++ V + R+ IK FC
Sbjct: 350 ISHSKRSARSLAVSRDNSMPVSHEVMVEGFLQIVSEARLSIKQFC 394
>12_02_0251 + 16436846-16438237
Length = 463
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 258 GADSRAK---LSVSCTSLVPADKPRLHRASCSTP 166
GA +R+ LSVSCT +V +HR+ CS P
Sbjct: 358 GASARSAPRLLSVSCTRVVDLTTTGVHRSPCSPP 391
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 255 ADSRAKLSVSCTSLVPADKPRLHRASCSTPY 163
A S +KLS C +VP P L R SC +PY
Sbjct: 273 AVSFSKLSSFCNLMVPIGPPSLSR-SCMSPY 302
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 170 VEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSA 307
VEQ CN + G+ LV + ++++E G K S++ + +A
Sbjct: 608 VEQKPECNGSSNGGSSLVDKKSAVSKEQQNGGMKKVGSNKVQPNAA 653
>01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955
Length = 406
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 201 CQPAPNWYMRRTAWRESPPLMGVPRQLAAGLRASVQLTNRPIFIFKIPSVRSQD 362
C P+P R T+ SPPL P AAG A+ T P + + PSV + +
Sbjct: 4 CSPSPRRRGRPTSPSGSPPLDRTPSAKAAGGGATT--TVSPYALARSPSVSAAE 55
>12_02_0103 - 13630229-13630335,13631608-13631703,13631796-13632036
Length = 147
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 218 VWCRLT-SQGYIEPVVQLRIHIKFFCFSFSFLISAPLR 108
VW R + +G P+V +I IK F+F+FL A +R
Sbjct: 62 VWMRFSFPRGKQSPMVGTKIKIKKIVFTFTFLHRAHIR 99
>05_03_0089 -
8327044-8327142,8327238-8327306,8327413-8327504,
8327932-8329042
Length = 456
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 93 SPTRRPKRCRDKEREREAEKFNVNTELNNWLDVTLACQPAPNWY 224
S T + C + RER E+ N L++WL +T WY
Sbjct: 2 SATEVMEECTETARERREEERLRNVNLDDWLPIT--SSRTAKWY 43
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 240 KLSVSCTSLVPADKPRLHRASCS 172
+L ++C+SL P+D+PR +A S
Sbjct: 214 RLGLACSSLAPSDRPRFGQAVVS 236
>04_01_0481 - 6302066-6303118
Length = 350
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 164 YGVEQLARCNLGLSAGTKLVHETDSLARE 250
YG+++ + NL +SAG H+T RE
Sbjct: 171 YGLDKESTANLDISAGGSFAHKTTKEGRE 199
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 170 VEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESF 301
+EQ+ R +LG+++ T L ++ +AP G + +SF
Sbjct: 533 LEQVRRTDLGVNSPTALTSRVSNIPEVNAPQGTNPLRHHSLQSF 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,336,776
Number of Sequences: 37544
Number of extensions: 217100
Number of successful extensions: 694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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