Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20c06
(510 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ277916-1|CAB98128.1| 257|Homo sapiens LIM-homeobox 9 protein. 31 2.3
BC059402-1|AAH59402.1| 842|Homo sapiens round spermatid basic p... 25 3.1
U76362-1|AAB53971.1| 560|Homo sapiens retinal glutamate transpo... 31 3.1
BC017242-1|AAH17242.1| 560|Homo sapiens solute carrier family 1... 31 3.1
BC012119-1|AAH12119.1| 560|Homo sapiens solute carrier family 1... 31 3.1
AL445183-7|CAH72594.1| 560|Homo sapiens solute carrier family 1... 31 3.1
U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subuni... 30 5.4
AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta subu... 30 5.4
AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein... 30 5.4
U66033-1|AAC51118.1| 572|Homo sapiens glypican-5 protein. 29 9.4
BC039730-1|AAH39730.1| 572|Homo sapiens glypican 5 protein. 29 9.4
AL163537-2|CAI13232.1| 572|Homo sapiens glypican 5 protein. 29 9.4
AL162456-1|CAI17090.1| 572|Homo sapiens glypican 5 protein. 29 9.4
AL157821-1|CAC34558.2| 572|Homo sapiens glypican 5 protein. 29 9.4
AL157363-1|CAH71865.1| 572|Homo sapiens glypican 5 protein. 29 9.4
AL138714-1|CAH70260.1| 572|Homo sapiens glypican 5 protein. 29 9.4
AF001462-1|AAC12261.1| 572|Homo sapiens glypican-5 protein. 29 9.4
>AJ277916-1|CAB98128.1| 257|Homo sapiens LIM-homeobox 9 protein.
Length = 257
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 164 YGVEQLARCNLGLSAGTKL-VHETDSLARESAPDGRSKTTSSRTESF 301
+ V++ ARC+LG+SA +E D L R+ P S+ T SF
Sbjct: 70 FSVQRCARCHLGISASESCNENEADHLDRDQQPYPPSQKTKRMRTSF 116
>BC059402-1|AAH59402.1| 842|Homo sapiens round spermatid basic
protein 1-like protein.
Length = 842
Score = 24.6 bits (51), Expect(2) = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 87 ATSPTRRPKRCRDKERER 140
A + +RRPK R+KER R
Sbjct: 153 ANAKSRRPKEKREKERRR 170
Score = 24.6 bits (51), Expect(2) = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 120 RDKEREREAEKFNVNTEL 173
RDKE+ERE +K V E+
Sbjct: 205 RDKEKEREKKKHKVMNEI 222
>U76362-1|AAB53971.1| 560|Homo sapiens retinal glutamate
transporter EAAT5 protein.
Length = 560
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 320 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 216
S+ ++ + Q+GC S TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533
>BC017242-1|AAH17242.1| 560|Homo sapiens solute carrier family 1
(glutamate transporter), member 7 protein.
Length = 560
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 320 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 216
S+ ++ + Q+GC S TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533
>BC012119-1|AAH12119.1| 560|Homo sapiens solute carrier family 1
(glutamate transporter), member 7 protein.
Length = 560
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 320 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 216
S+ ++ + Q+GC S TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533
>AL445183-7|CAH72594.1| 560|Homo sapiens solute carrier family 1
(glutamate transporter), member 7 protein.
Length = 560
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 320 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 216
S+ ++ + Q+GC S TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533
>U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subunit
protein.
Length = 1112
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 84 RATSPTRRPKRCRDKER--EREAEKFNVNTELNNWLDVTLACQPAP 215
++ P ++ K+ ++KER E++ EK +L+ WL T PAP
Sbjct: 749 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAP 794
>AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta
subunit, partial CDS protein.
Length = 1079
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 84 RATSPTRRPKRCRDKER--EREAEKFNVNTELNNWLDVTLACQPAP 215
++ P ++ K+ ++KER E++ EK +L+ WL T PAP
Sbjct: 716 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAP 761
>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
complex 3 delta 1 subunit variant protein.
Length = 1284
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 84 RATSPTRRPKRCRDKER--EREAEKFNVNTELNNWLDVTLACQPAP 215
++ P ++ K+ ++KER E++ EK +L+ WL T PAP
Sbjct: 909 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAP 954
>U66033-1|AAC51118.1| 572|Homo sapiens glypican-5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>BC039730-1|AAH39730.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>AL163537-2|CAI13232.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>AL162456-1|CAI17090.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>AL157821-1|CAC34558.2| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>AL157363-1|CAH71865.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>AL138714-1|CAH70260.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
>AF001462-1|AAC12261.1| 572|Homo sapiens glypican-5 protein.
Length = 572
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 482 SLNIALYIINLNDLIKKTENKTHKQFCD*YQNRTLQ 375
S N A + L LIK+ EN T FC Y+N L+
Sbjct: 101 SRNAAAFQETLETLIKQAENYTSILFCSTYRNMALE 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,351,066
Number of Sequences: 237096
Number of extensions: 1235468
Number of successful extensions: 3931
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3693
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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