Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c04
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    27   1.5  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   3.4  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   3.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   4.4  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   4.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   5.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.7  
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    25   7.7  

>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 ETEPEYPDGRLVIQYLQEKRNGATIKQILDHLRLKHG 213
           ET+ + P   L I+ ++EK     +K+IL+HL   +G
Sbjct: 18  ETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYG 54


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 182 KFWIICGSSTAVPPKISTNQLVL 250
           K WIICG ST +P  +S  Q+ L
Sbjct: 353 KTWIICGKSTRLP--VSVFQIAL 373


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 332 PHNSLANQFI**DPFLSKKPRAVP 261
           P NSLANQFI      SKK R +P
Sbjct: 354 PQNSLANQFIRYWERASKKKRDIP 377


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = +1

Query: 118 YPDGRLVIQYLQEKRNGATIKQIL--DH----LRLKHGSTSEDLDQSVGSMLEKGT-ALG 276
           Y +G+ +++Y  E R     K I+   H    L  K GST ED++  + +++++G+  L 
Sbjct: 396 YLNGKSLVKYSLESRRRILEKVIVRESHRMSILPYKVGSTIEDIEAELRNVIQEGSEGLV 455

Query: 277 FLERKGSHYM 306
             +  GS+++
Sbjct: 456 IKKPSGSYHL 465


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 115 EYPDGRLVIQYLQEKRNGATIKQILDHLRLKHGSTSEDLDQSVGSMLEKGTALGFLERKG 294
           +YP     ++YL+  R+   IK+I+D  R      SE +D +  +  +  T LG    +G
Sbjct: 118 DYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSE-MDPAEHTRHDSKT-LGLNHNQG 175

Query: 295 SH 300
           +H
Sbjct: 176 AH 177


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 67  IRNFASRMTEIIETEPEYPDGRLVIQYLQEKRNGATIKQILDHLRLKHGSTSEDL 231
           IR     +  +IET P++  G +    L+E  N  +  Q L     ++ S SED+
Sbjct: 260 IRKARKLLQSVIETNPKHASGWVAAARLEEVANKLSQAQSLILKGCENCSRSEDV 314


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 150 TGKTKWCNNKTNFGS---SAAQARQYLRRSRPISWFYV 254
           T   KWC  ++NF      + Q  +     RP+SWF +
Sbjct: 267 TPDEKWCFIRSNFAGFDDPSFQIPELAAVHRPVSWFVI 304


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 278 KPRAVPFSNIEPTDWSRS 225
           K  A+PF  I PT+W R+
Sbjct: 75  KQHAMPFFIINPTEWKRN 92


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 443 PICLIPNLSNSGEGEGKNNYW 505
           P+C+  N +  G+G+G   YW
Sbjct: 117 PVCVKGNETRMGKGKGAFEYW 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,044
Number of Sequences: 5004
Number of extensions: 38452
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)