Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c04
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596...    32   0.28 
12_02_0202 - 15465885-15466241,15466539-15468122                       29   3.4  
12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569...    28   6.0  
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    28   6.0  

>05_02_0043 +
           5964749-5966406,5966725-5966791,5967174-5967329,
           5967782-5967865,5968020-5968073
          Length = 672

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 175 IKQILDHLRLKHGSTSEDLDQSVGSMLEKGTALGFLERKGSHYMNWLAKELCGK 336
           I +I +H+R+    + E L  S+G      +AL F+ERK  + ++++ K  C K
Sbjct: 43  IPRIHEHIRMIDRDSYEPLILSIGPYHNGSSALSFMERKKWNCLDYILKLSCQK 96


>12_02_0202 - 15465885-15466241,15466539-15468122
          Length = 646

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 31  QAYIFNFF*TKLIRNFASRMTEIIETEPEYPD-GRLVIQYLQEKRNG 168
           Q  IF +   +   NF   + + +  + + PD G  V+QYLQE R+G
Sbjct: 59  QGVIFGY--RETFANFKGSLVDAVSLQYDEPDLGVAVLQYLQEIRSG 103


>12_02_0380 -
           18356210-18356329,18356415-18356673,18356754-18356917,
           18357235-18357397,18357465-18359020
          Length = 753

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +1

Query: 61  KLIRNFASRMTEIIETEPEYPDGRLVIQYLQEKRNGATIKQILDHLRLKHGSTSEDLDQS 240
           +L+ N  SR  E+  +E +Y  G  V+QY+ +        +ILD L    GS S  + +S
Sbjct: 610 QLLYNITSRALEL--SEHQY--GNYVVQYILDLHISWATDEILDKLEDHFGSLS--MQKS 663

Query: 241 VGSMLEK 261
             +++EK
Sbjct: 664 SSNVVEK 670


>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 109 EPEYPDGRLVIQYLQEKRNGATI 177
           +P++PDG L+ QYL     GATI
Sbjct: 707 DPKFPDGGLMSQYLDYLPLGATI 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,241,862
Number of Sequences: 37544
Number of extensions: 220951
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)