Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c04
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-8|AAD31046.2|  767|Caenorhabditis elegans Related to isle...    30   1.3  
AJ245560-1|CAB52188.1|  767|Caenorhabditis elegans IDA-1 protein...    30   1.3  
AF126740-1|AAK14908.1|  767|Caenorhabditis elegans IA2 protein.        30   1.3  
U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U20862-4|AAK29862.1|  196|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U28971-8|AAD31046.2|  767|Caenorhabditis elegans Related to islet
           cell diabetesautoantigen protein 1 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 446 ICLIPNLSNSGEGEGKNNYWPES 514
           +CL+ NLS   E + + NYWP++
Sbjct: 592 VCLVVNLSTPEECKQEKNYWPDT 614


>AJ245560-1|CAB52188.1|  767|Caenorhabditis elegans IDA-1 protein
           protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 446 ICLIPNLSNSGEGEGKNNYWPES 514
           +CL+ NLS   E + + NYWP++
Sbjct: 592 VCLVVNLSTPEECKQEKNYWPDT 614


>AF126740-1|AAK14908.1|  767|Caenorhabditis elegans IA2 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 446 ICLIPNLSNSGEGEGKNNYWPES 514
           +CL+ NLS   E + + NYWP++
Sbjct: 592 VCLVVNLSTPEECKQEKNYWPDT 614


>U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical
           protein K02H8.1 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 112 PEYPDGRLVIQYLQEKRNGATIKQILDHLRLKHGSTSEDLDQSVGSMLEKGTALGFLERK 291
           P Y +G +  Q LQ+    A + Q+LD  +  H   ++  +Q + +    G   G L  +
Sbjct: 155 PPYYNGMMYPQVLQDPYTAAAVNQVLDSNQEYHSPPTDKKNQQLQTAALLGNVGGLLSAQ 214

Query: 292 GS 297
            +
Sbjct: 215 SA 216


>U20862-4|AAK29862.1|  196|Caenorhabditis elegans Hypothetical
           protein W06E11.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 290 FLSKKPRAVPFSNIEPTDWSRSSEVL 213
           FL KKP  V   ++E   WS   EVL
Sbjct: 43  FLIKKPIGVSLEDLEALKWSNDEEVL 68


>U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical
           protein F23F12.4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 85  RMTEIIETEPE-YPDGRLVIQYLQEKRNGATIKQILDHLR----LKHGSTSEDLDQ 237
           +M E  E + E Y DG++   Y + K+    I ++LD+LR    +K  S S  +D+
Sbjct: 101 KMDENTEVQMEHYYDGQICRSYWKMKKETEAILKVLDYLRSVFNVKEVSVSFSIDE 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,159
Number of Sequences: 27780
Number of extensions: 207709
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)