Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20c03
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 108 4e-24
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 68 8e-12
06_01_0671 - 4899611-4899829,4900870-4901448 65 5e-11
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 61 7e-10
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 52 4e-07
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 31 0.62
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 30 1.4
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156... 30 1.9
01_06_1608 - 38612754-38616947,38617030-38617095 29 4.4
01_06_0460 + 29545030-29546377,29546463-29547085 29 4.4
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212... 28 7.6
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 28 7.6
07_01_0284 - 2082249-2082256,2082496-2083009 28 7.6
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 108 bits (259), Expect = 4e-24
Identities = 47/84 (55%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +1
Query: 412 FSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALRGLFIIDRNGTLRH 588
FSHLAW+ T RK GGLG ++ PL++D K ISK + VL+ D G ALRGLFIID+ G ++H
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 589 MSVNDLPVGRSVDETLRLVKAFQF 660
++N+L +GRSVDET+R ++A Q+
Sbjct: 272 STINNLAIGRSVDETMRTLQALQY 295
Score = 97.9 bits (233), Expect = 6e-21
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +1
Query: 184 APKVQKPAPDFSATAVVNGEFNQLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAK 360
AP V APDF A AV + EF +KLSD+ GK YV+LFFYPLDFTFVCPTE+ AFSD+
Sbjct: 67 APLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYD 126
Query: 361 DFAGIDCQVIGVSTDSEFS 417
+F ++ +++GVS DS +S
Sbjct: 127 EFEKLNTEILGVSIDSVWS 145
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 67.7 bits (158), Expect = 8e-12
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Frame = +1
Query: 250 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 426
++++ DF G YV+LF +P DFT VC TEL A + AK+F +++G+S D SH
Sbjct: 56 KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115
Query: 427 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-----GFAL--RGLFIIDRNGTLR 585
WI ++ P++AD ++ K +++ D G L R L I+ + ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175
Query: 586 HMSVNDLPVGRSVDETLRLVKAFQ 657
+ VGR++DE +R V A Q
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQ 199
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 64.9 bits (151), Expect = 5e-11
Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Frame = +1
Query: 64 KSLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGE 243
+S + HA +++QLS + A +VA+ + S+ + K AP+F+ + +
Sbjct: 84 RSTMMHAAAWLLLQQLSPA----AARVARAAD--DDSSVQVSK-GSAAPNFTLR---DQD 133
Query: 244 FNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHL 423
+ LS F G+ VV++FYP D T C + AF D + F +VIG+S D SH
Sbjct: 134 GRAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHK 193
Query: 424 AWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDDGFALRG--LFIIDRNGTLRHMSV 597
+ +K K+ LL+D ++ K++ V D L G +++D+NG ++++
Sbjct: 194 EF---KKK----YKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYN 246
Query: 598 NDLPVGRSVDETLRLVKA 651
N + + ETL+++++
Sbjct: 247 NQFQPEKHIGETLKILQS 264
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/59 (47%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +1
Query: 487 DYKKQISKDYDVLLDD-GFALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQF 660
+++K ++ V +D G ALRGLFIID+ G ++H ++N+L +GRSVDETLR ++A Q+
Sbjct: 63 EFEKINTEVLGVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 121
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 316 FVCPTELIAFSDKAKDFAGIDCQVIGVSTDS 408
FV E+ AFSD+ ++F I+ +V+GVS DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 52.0 bits (119), Expect = 4e-07
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Frame = +1
Query: 250 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 426
+++L DF G YV++F +P DFT VC TEL + A +F +++G S D SH
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 427 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-----GFAL--RGLFIIDRNGTLR 585
WI ++ P++AD ++ + +++ D G L R L I+ + ++
Sbjct: 81 WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140
Query: 586 HMSVNDLPVGRSVDETLRLVKA 651
+ GR++ E LR A
Sbjct: 141 LSFLFPACTGRNMAEVLRATDA 162
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 31.5 bits (68), Expect = 0.62
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Frame = +1
Query: 229 VVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCP-TELIA-FSDKAKDFAGIDCQVIGVST 402
+++ + +++ +SD GKYV L F + V T L+A F +K K+ G +V+ VS
Sbjct: 181 LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKE-VGEKFEVVAVSL 239
Query: 403 DSE-------FSHLAWINTPRKD 450
DS+ F+ + W+ P++D
Sbjct: 240 DSDEELSNESFAGMPWLAIPQED 262
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +1
Query: 223 TAVVNGEFNQLK-------LSDFTGKYVVLFFYPLDFTFVCPTELIAFS---DKAKDFAG 372
TA + G FN L DF GK+ +L+F +CP EL + DK K+ A
Sbjct: 178 TAAIGGPFNLLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAK 237
Query: 373 IDCQVIGVSTDSE 411
++ + ++ D E
Sbjct: 238 MEVVPVFITVDPE 250
>06_03_0251 +
18715023-18715106,18715274-18715396,18715509-18715611,
18716061-18716134,18716208-18716288,18716370-18716522,
18717435-18717506,18718313-18718396
Length = 257
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 KSLLTHAKMSFI--VKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQ-KPAPDFSATAVV 234
++ +TH K F+ QL +VLS K+ ++ + K KP D SA+ +
Sbjct: 128 EAAVTHCKGHFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRAL 187
Query: 235 NGEFNQL 255
E+NQL
Sbjct: 188 LEEYNQL 194
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 91 SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQK 201
SF+ +++SRS S +V R+ FST +T A + K
Sbjct: 165 SFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICK 201
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 627 VHGAAHGQIVHRHVTQGAITVD 562
+HG + G++ HRH+T I VD
Sbjct: 478 LHGVSGGKLAHRHLTSSNILVD 499
>12_01_0286 -
2127622-2127897,2128611-2128997,2129195-2129550,
2129923-2130046,2130128-2130196,2131190-2131238,
2132222-2132336,2132854-2132903,2133000-2133137,
2134182-2134228
Length = 536
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 460 GKMEIPLLADYKKQISKDYDVLLDDGFA 543
G+ ++P Y +Q ++DYDVL D A
Sbjct: 341 GEQQMPYPEQYMQQSTQDYDVLADPNIA 368
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 490 YKKQISKDYDVLLDDGFALRGLFIIDRNGTL 582
Y++++ KD+ LLDD LF+I++ G +
Sbjct: 43 YRRRVLKDFSKLLDDEIEKIVLFMIEQQGLI 73
>07_01_0284 - 2082249-2082256,2082496-2083009
Length = 173
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 52 KYNPKS-LLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPA 207
K +PK+ L H F+ +R LSP F +T AP + PA
Sbjct: 37 KMDPKTTFLAHGLADFVASAAARDALSPIFAKLAAAEPPPPPSTTAPIIAAPA 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,292
Number of Sequences: 37544
Number of extensions: 339648
Number of successful extensions: 904
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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