Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20c01
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 30 1.4
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737... 29 2.5
05_01_0567 - 4967373-4967675,4968023-4968083,4968217-4968284,496... 29 3.3
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 28 5.7
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 28 5.7
12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078 28 7.5
12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754 28 7.5
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449... 27 9.9
04_01_0055 + 576483-576584,576684-576865,576950-577316,577391-57... 27 9.9
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 398 VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDN 297
VKHSD +P T + ANV SKS I P+ G +N
Sbjct: 657 VKHSDLKPGTVSAANVDSKS--ISAKPSTGSFEN 688
>01_06_1674 +
39072861-39073260,39073288-39073358,39073659-39073716,
39074604-39074659,39075179-39075400
Length = 268
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 67 VLKHVRYISQF-KIQRTDCVPYGTPRKIK 150
V++ R IS F K+QR D P+GT RK+K
Sbjct: 208 VIEATRSISYFAKLQRGDWSPHGTARKLK 236
>05_01_0567 -
4967373-4967675,4968023-4968083,4968217-4968284,
4968390-4968425,4968553-4968726,4968983-4969023,
4969138-4969187,4969300-4969388,4969490-4969564,
4969684-4969772,4971320-4971434
Length = 366
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 4 FFQYYFSKLKMLEYCFFRKSLVLKHVRYISQFKIQR 111
FF+ +F ++ +YC R S V H+ S+F Q+
Sbjct: 71 FFRQFFRSVRRADYCALRHSFVNVHLAPGSKFDFQK 106
>02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/97 (24%), Positives = 40/97 (41%)
Frame = +1
Query: 43 YCFFRKSLVLKHVRYISQFKIQRTDCVPYGTPRKIKDPKLCGHKDKGLVLGVYYNENAKG 222
+ + K + L H +++ +K + DC+ P K D L +DK + +N+ K
Sbjct: 750 HIYSEKLVHLPHCYFVNDYKQKNRDCLDPVCPHKRSDYGL--PEDK--FIFACFNQLYKM 805
Query: 223 EPAILTASAQKYDRESGGKLWKMLKLSPIPKLGESRI 333
+P I R LW L P GE+R+
Sbjct: 806 DPEIFDTWCNILKRVPNSALW----LLRFPAAGETRV 838
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 239 LQVHKSMIENPVVNFGKC*NYHPSRNWENQEYFS 340
LQVH S + N ++N +C + +P W Y S
Sbjct: 13 LQVHSSPLTNRLINHARCKDQNPYLRWYIWNYES 46
>12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078
Length = 256
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 470 DIAPTPAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNIL 327
D T RI LFS + L++ V+H + A N N G++ ++L
Sbjct: 35 DEGETTLQARIQHLFSESKKLSINVEHIIAQVSQAVNMNCGAEENSLL 82
>12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754
Length = 297
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 470 DIAPTPAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNIL 327
D T RI LFS + L++ V+H + A N N G++ ++L
Sbjct: 35 DEGETTLQARIQHLFSESKKLSINVEHIIAQVSQAVNMNCGAEENSLL 82
>08_02_1420 +
26942777-26942905,26944415-26944511,26944596-26944962,
26945286-26945793
Length = 366
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 455 PAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNILDSPNFGMG-DNFNIFQS 279
P A+ I S +++ S + H P +N++ G +D P +G G + F F
Sbjct: 254 PRALTITSFIAASSSAEIGGHHGFAPPVNRSNSSDGEAVSRPVDRP-YGWGQEGFTPFPW 312
Query: 278 LPPDSLSYF 252
+P D S++
Sbjct: 313 IPADGESHW 321
>04_01_0055 +
576483-576584,576684-576865,576950-577316,577391-578065
Length = 441
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 358 AFVAVSGLGSECLTYNVSEQLDENKEAIRIAA 453
A VAV+G T +V E+LD + AIR AA
Sbjct: 23 AIVAVAGTKKALSTVDVEEELDAARAAIRRAA 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,421
Number of Sequences: 37544
Number of extensions: 371464
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -