Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20b21
(580 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98433-1|CAA67075.1| 117|Homo sapiens RNA polymerase II subunit... 194 1e-49
X82385-1|CAA57785.1| 117|Homo sapiens RNA polymerase II subunit... 194 1e-49
L37127-1|AAD05361.1| 117|Homo sapiens RNA polymerase II protein. 194 1e-49
BC141830-1|AAI41831.1| 117|Homo sapiens POLR2J protein protein. 194 1e-49
BC139902-1|AAI39903.1| 117|Homo sapiens polymerase (RNA) II (DN... 194 1e-49
BC065711-1|AAH65711.1| 117|Homo sapiens POLR2J protein protein. 194 1e-49
BC024165-1|AAH24165.1| 117|Homo sapiens polymerase (RNA) II (DN... 194 1e-49
AJ277932-1|CAC18368.1| 127|Homo sapiens RPB11a protein protein. 183 5e-46
AJ277931-1|CAC18332.1| 115|Homo sapiens RPB11b1alpha protein pr... 175 1e-43
AJ277739-1|CAC18329.1| 115|Homo sapiens RPB11b1alpha protein pr... 175 1e-43
AJ277741-1|CAC18331.1| 115|Homo sapiens RPB11b2alpha protein pr... 174 2e-43
AC004084-4|AAP22342.1| 115|Homo sapiens unknown protein. 174 2e-43
AF468111-1|AAL87672.1| 158|Homo sapiens DNA-directed RNA polyme... 173 3e-43
BC105584-1|AAI05585.1| 138|Homo sapiens POLR2J4 protein protein. 173 4e-43
BC017341-1|AAH17341.2| 160|Homo sapiens MGC13098 protein protein. 173 5e-43
BC017250-1|AAH17250.1| 179|Homo sapiens MGC13098 protein protein. 173 5e-43
AB209398-1|BAD92635.1| 180|Homo sapiens MGC13098 protein varian... 172 7e-43
BC062722-1|AAH62722.1| 130|Homo sapiens POLR2J4 protein protein. 171 2e-42
BC086857-1|AAH86857.1| 116|Homo sapiens DNA directed RNA polyme... 73 7e-13
AJ277740-1|CAC18330.1| 116|Homo sapiens RPB11b1beta protein pro... 73 7e-13
AC004084-3|AAP22341.1| 76|Homo sapiens unknown protein. 72 1e-12
BC000889-1|AAH00889.1| 133|Homo sapiens polymerase (RNA) I poly... 69 9e-12
AL136439-1|CAI16933.1| 133|Homo sapiens polymerase (RNA) I poly... 69 9e-12
BC110999-1|AAI11000.1| 357|Homo sapiens OGFRL1 protein protein. 31 3.9
BC018688-1|AAH18688.1| 450|Homo sapiens opioid growth factor re... 31 3.9
AL136164-1|CAI20223.1| 451|Homo sapiens protein ( Human DNA seq... 31 3.9
AL355001-1|CAI16178.1| 493|Homo sapiens zinc finger, MYM-type 5... 29 9.0
AL354808-2|CAI41001.1| 493|Homo sapiens zinc finger, MYM-type 5... 29 9.0
>X98433-1|CAA67075.1| 117|Homo sapiens RNA polymerase II subunit
protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>X82385-1|CAA57785.1| 117|Homo sapiens RNA polymerase II subunit
protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>L37127-1|AAD05361.1| 117|Homo sapiens RNA polymerase II protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>BC141830-1|AAI41831.1| 117|Homo sapiens POLR2J protein protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>BC139902-1|AAI39903.1| 117|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide J, 13.3kDa protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>BC065711-1|AAH65711.1| 117|Homo sapiens POLR2J protein protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>BC024165-1|AAH24165.1| 117|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide J, 13.3kDa protein.
Length = 117
Score = 194 bits (474), Expect = 1e-49
Identities = 85/117 (72%), Positives = 104/117 (88%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 512
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
>AJ277932-1|CAC18368.1| 127|Homo sapiens RPB11a protein protein.
Length = 127
Score = 183 bits (445), Expect = 5e-46
Identities = 85/127 (66%), Positives = 104/127 (81%), Gaps = 10/127 (7%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK----------EAIK 491
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGPGGADGVAIK 120
Query: 492 EKKEGLD 512
+K+EG++
Sbjct: 121 DKQEGIE 127
>AJ277931-1|CAC18332.1| 115|Homo sapiens RPB11b1alpha protein
protein.
Length = 115
Score = 175 bits (425), Expect = 1e-43
Identities = 78/109 (71%), Positives = 94/109 (86%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 488
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ +
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
>AJ277739-1|CAC18329.1| 115|Homo sapiens RPB11b1alpha protein
protein.
Length = 115
Score = 175 bits (425), Expect = 1e-43
Identities = 78/109 (71%), Positives = 94/109 (86%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 488
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ +
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
>AJ277741-1|CAC18331.1| 115|Homo sapiens RPB11b2alpha protein
protein.
Length = 115
Score = 174 bits (423), Expect = 2e-43
Identities = 78/109 (71%), Positives = 94/109 (86%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 488
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ +
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
>AC004084-4|AAP22342.1| 115|Homo sapiens unknown protein.
Length = 115
Score = 174 bits (423), Expect = 2e-43
Identities = 78/109 (71%), Positives = 94/109 (86%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 488
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ +
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
>AF468111-1|AAL87672.1| 158|Homo sapiens DNA-directed RNA
polymerase II subunit 11 protein.
Length = 158
Score = 173 bits (422), Expect = 3e-43
Identities = 78/106 (73%), Positives = 93/106 (87%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 479
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 105
>BC105584-1|AAI05585.1| 138|Homo sapiens POLR2J4 protein protein.
Length = 138
Score = 173 bits (421), Expect = 4e-43
Identities = 77/110 (70%), Positives = 94/110 (85%), Gaps = 1/110 (0%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 338
+NAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ Q LKDP+VLFA
Sbjct: 22 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 81
Query: 339 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 488
GYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ +
Sbjct: 82 GYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 131
>BC017341-1|AAH17341.2| 160|Homo sapiens MGC13098 protein protein.
Length = 160
Score = 173 bits (420), Expect = 5e-43
Identities = 77/107 (71%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 338
+NAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ Q LKDP+VLFA
Sbjct: 16 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 75
Query: 339 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 479
GYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+
Sbjct: 76 GYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 122
>BC017250-1|AAH17250.1| 179|Homo sapiens MGC13098 protein protein.
Length = 179
Score = 173 bits (420), Expect = 5e-43
Identities = 77/107 (71%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 338
+NAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ Q LKDP+VLFA
Sbjct: 20 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 79
Query: 339 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 479
GYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+
Sbjct: 80 GYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 126
>AB209398-1|BAD92635.1| 180|Homo sapiens MGC13098 protein variant
protein.
Length = 180
Score = 172 bits (419), Expect = 7e-43
Identities = 77/106 (72%), Positives = 92/106 (86%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 341
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 23 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 81
Query: 342 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 479
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL ELSL EERF+
Sbjct: 82 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFR 127
>BC062722-1|AAH62722.1| 130|Homo sapiens POLR2J4 protein protein.
Length = 130
Score = 171 bits (415), Expect = 2e-42
Identities = 76/110 (69%), Positives = 93/110 (84%), Gaps = 1/110 (0%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 338
+NAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+ Q LKDP+VLFA
Sbjct: 14 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 73
Query: 339 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 488
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ +
Sbjct: 74 SYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 123
>BC086857-1|AAH86857.1| 116|Homo sapiens DNA directed RNA
polymerase II polypeptide J-related protein.
Length = 116
Score = 72.9 bits (171), Expect = 7e-13
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 302
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIK 46
>AJ277740-1|CAC18330.1| 116|Homo sapiens RPB11b1beta protein
protein.
Length = 116
Score = 72.9 bits (171), Expect = 7e-13
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 302
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIK 46
>AC004084-3|AAP22341.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 72.1 bits (169), Expect = 1e-12
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +3
Query: 162 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 302
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIK 46
>BC000889-1|AAH00889.1| 133|Homo sapiens polymerase (RNA) I
polypeptide D, 16kDa protein.
Length = 133
Score = 69.3 bits (162), Expect = 9e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 258 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 437
F +++EDHTLGN +R+ ++K+P+V F GY HP E K LRIQT E F +
Sbjct: 42 FVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLN 101
Query: 438 DLTSELSLFEERFKEAIKEKKE 503
+L + ++F+ +IK+ K+
Sbjct: 102 ELMNVCQHVLDKFEASIKDYKD 123
>AL136439-1|CAI16933.1| 133|Homo sapiens polymerase (RNA) I
polypeptide D, 16kDa protein.
Length = 133
Score = 69.3 bits (162), Expect = 9e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 258 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 437
F +++EDHTLGN +R+ ++K+P+V F GY HP E K LRIQT E F +
Sbjct: 42 FVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLN 101
Query: 438 DLTSELSLFEERFKEAIKEKKE 503
+L + ++F+ +IK+ K+
Sbjct: 102 ELMNVCQHVLDKFEASIKDYKD 123
>BC110999-1|AAI11000.1| 357|Homo sapiens OGFRL1 protein protein.
Length = 357
Score = 30.7 bits (66), Expect = 3.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 176 RRCIHDYKFVIKFFGLKILQRNPN--KAI--FSFFYQTNSSQINYKLNNLFIKSYNRVTY 9
RR + YK +++FFG+K+ + N +A+ F N SQ NY +KS + Y
Sbjct: 192 RRFLLAYKMMLEFFGIKLTDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGY 251
>BC018688-1|AAH18688.1| 450|Homo sapiens opioid growth factor
receptor-like 1 protein.
Length = 450
Score = 30.7 bits (66), Expect = 3.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 176 RRCIHDYKFVIKFFGLKILQRNPN--KAI--FSFFYQTNSSQINYKLNNLFIKSYNRVTY 9
RR + YK +++FFG+K+ + N +A+ F N SQ NY +KS + Y
Sbjct: 192 RRFLLAYKMMLEFFGIKLTDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGY 251
>AL136164-1|CAI20223.1| 451|Homo sapiens protein ( Human DNA
sequence from clone RP3-331H24 on chromosome 6 Contains
the 5' end of a novel gene, the gene for a novel protein
similar to ).
Length = 451
Score = 30.7 bits (66), Expect = 3.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 176 RRCIHDYKFVIKFFGLKILQRNPN--KAI--FSFFYQTNSSQINYKLNNLFIKSYNRVTY 9
RR + YK +++FFG+K+ + N +A+ F N SQ NY +KS + Y
Sbjct: 192 RRFLLAYKMMLEFFGIKLTDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGY 251
>AL355001-1|CAI16178.1| 493|Homo sapiens zinc finger, MYM-type 5
protein.
Length = 493
Score = 29.5 bits (63), Expect = 9.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 197 QQERFECRRCIHDYKFVIKFFGLKILQRNPNKAIFSFFYQTNSSQINYKLNNLFIK 30
QQ+RF C+ CI++YK +++ K+ K + F + N Q+ Y +N +K
Sbjct: 226 QQKRFCCQSCINEYKQMMETKSKKLTASENRKR--NAFREENEKQL-YGSSNTLLK 278
>AL354808-2|CAI41001.1| 493|Homo sapiens zinc finger, MYM-type 5
protein.
Length = 493
Score = 29.5 bits (63), Expect = 9.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 197 QQERFECRRCIHDYKFVIKFFGLKILQRNPNKAIFSFFYQTNSSQINYKLNNLFIK 30
QQ+RF C+ CI++YK +++ K+ K + F + N Q+ Y +N +K
Sbjct: 226 QQKRFCCQSCINEYKQMMETKSKKLTASENRKR--NAFREENEKQL-YGSSNTLLK 278
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,584,257
Number of Sequences: 237096
Number of extensions: 1203379
Number of successful extensions: 2057
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -