Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b20
         (141 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    27   2.1  
06_02_0100 + 11735424-11735958,11736168-11736916,11752859-117531...    27   2.8  

>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 96  LNISLCFDLYKNKKK 140
           +N + CFD+YKN KK
Sbjct: 187 VNFTFCFDIYKNVKK 201


>06_02_0100 +
           11735424-11735958,11736168-11736916,11752859-11753118,
           11760085-11760124
          Length = 527

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +3

Query: 69  NAEVKTLILLNISLCFDLYKNKK 137
           NAE K+L   N SLC DL K+KK
Sbjct: 476 NAESKSLSGENKSLCTDLEKSKK 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,241
Number of Sequences: 37544
Number of extensions: 21537
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)