Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b20
         (141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   3.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   5.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               18   9.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    18   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       18   9.5  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 109 RLIFKSIKVFTSAFL*NWYE 50
           RLI +S  V  +A+  +WY+
Sbjct: 179 RLIEESSSVMEAAYSCHWYD 198


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 96  KVSKFSLQRFCKIGMNGFFSLFMFCHLRDFVV 1
           K++KF+ ++     +     +F+ C L  FVV
Sbjct: 323 KLAKFAKEKKAAKTLGIVMGVFIICWLPFFVV 354


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 94 SIKVFTSAFL*NW 56
          SIK+ T+  L NW
Sbjct: 4  SIKIITTTGLENW 16


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  VKTLILLNISLCFDLY 125
           +KT+++L  +LC   Y
Sbjct: 1   MKTIVILLFTLCIVSY 16


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 118 SKQRLIFKSIKVFTSAFL*NWYEWF 44
           +K+R    ++ +  SAF+  W  +F
Sbjct: 365 AKERKASTTLGIIMSAFIVCWLPFF 389


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 57  QFYRNAEVK 83
           +FY+NA+V+
Sbjct: 496 EFYKNADVR 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,170
Number of Sequences: 438
Number of extensions: 309
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)