Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20b18
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 33 0.16
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 0.87
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 31 0.87
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 1.5
09_04_0549 + 18478475-18478664,18479381-18480648 29 2.0
09_04_0547 + 18467016-18467205,18467922-18469189 29 2.0
11_01_0260 - 1985258-1985794,1986874-1986990 29 2.7
07_01_0084 + 657846-658538,660652-661920 29 3.5
09_06_0019 + 20258844-20258988,20259870-20259974,20261027-202610... 28 4.6
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 28 6.1
02_04_0521 - 23631951-23633810 28 6.1
05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332 27 8.1
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 27 8.1
02_04_0633 - 24616563-24617279 27 8.1
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 27 8.1
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 8.1
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 337 IGSGNYDTNYNMFVPGTIFRIVFEIKDT 420
IGS NYDT+Y + VP RI+F++ T
Sbjct: 237 IGSSNYDTSYKIRVPSWTDRILFKVDHT 264
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 102 GRLRGY*--T*NAGFHRQHTGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCGSP 275
GR RGY + + + ++SW ++R R ++ + R P RSR R + P
Sbjct: 1223 GRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGP 1282
Query: 276 LRREVP 293
RR P
Sbjct: 1283 ARRPRP 1288
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 139 FTANIPGLLKVGDKIEIGGKIKENARKMSVNLCAQE--GEEPRDVVLHFDVRFHRDNI 306
FT +IP L VG + I G + ++L E G + +VLH+DVR D +
Sbjct: 187 FTIDIPCGLIVGSSVTIIGTPGSLSGNFRIDLVGTELPGGSGKPIVLHYDVRLTSDEL 244
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 291 PPGQHHIAVQEERHLDRKRKLRHQLQH 371
PP QH Q+++HLD + L+HQ QH
Sbjct: 145 PPPQHQ---QQQQHLDAMQDLQHQHQH 168
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 307 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 444
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 307 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 444
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>11_01_0260 - 1985258-1985794,1986874-1986990
Length = 217
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 156 GITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCG 269
G+ K RQN++R + +G C+ ++ P+ + CG
Sbjct: 153 GLWKVGRQNKERGRGRGRCRGSLQPPVHVVGQQQSSCG 190
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 378 SWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIHCGLGGRGEDLALLF 542
S+H I HGRH GEV+F+ P ++ Q+H +++ ++F
Sbjct: 110 SYHHIDHDGNPLPHGRHRVAASGEVAFDSP----SRPDQVHLSFADGVDEMRVMF 160
>09_06_0019 +
20258844-20258988,20259870-20259974,20261027-20261097,
20261658-20261714,20262661-20262849,20263096-20263119
Length = 196
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 153 TGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGA--EGCGSPLRREVPPGQHHIAVQEE 326
TG++K+ QN+ W+ + +K V L + G + G P RR PG A ++
Sbjct: 100 TGLSKALYQNKTVWKAI-DYEKLVNSWLYNELPGCTDDVAGRPSRRFRCPGDFAFATDQK 158
Query: 327 RHLDRK 344
+HL R+
Sbjct: 159 QHLPRE 164
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 193 GKIKENARKMSVNLCAQEGEEPRDVVLHFDVRFHRDNIISLSRKNGIWIGSGNYDTN 363
G++ +R+ + C++ G PR D+ H ++ SRK + GS +N
Sbjct: 76 GRMAYGSRRNAAGTCSETGNRPRRETAGQDLLDHLKERVNSSRKRSLSGGSSPSSSN 132
>02_04_0521 - 23631951-23633810
Length = 619
Score = 27.9 bits (59), Expect = 6.1
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +3
Query: 252 GAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHVCSWHDISDSLRNQGHGRHH 431
G G GSP +PP Q ++V + R+ +L + LQ + D+S RN+ G
Sbjct: 402 GGSGQGSPSEAVLPP-QLFVSVSTDM-AGRQLELGYDLQ-AATGIDLS---RNELRGEIP 455
Query: 432 DILPGEVSFE-LPPEDTTQHGQIHCGLGGRGEDLALLF*FREQNG 563
D L E L GQI G+GG G+ L F E +G
Sbjct: 456 DGLVAMKGLEYLNLSCNYLDGQIPSGIGGMGKLRTLDFSHNELSG 500
>05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332
Length = 225
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +3
Query: 243 RRRGAEGCGSPL---RREVPPGQHHIAVQEERHLDRKRKLRHQLQHVCSWHDISDSLRNQ 413
RR G G G L R E P G+ + V ++ K + L HV S D L
Sbjct: 54 RRGGGGGGGGGLCRSREEAPAGRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVL 113
Query: 414 GHG 422
HG
Sbjct: 114 PHG 116
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 213 KKDVREPLRSRRRGAEGCGSPLRREVPPGQHHIAVQEERHLDRK 344
K D E LR + R + Q HIAV EE +LD+K
Sbjct: 789 KMDAEESLREEKDKLCSIIDERCRNIDELQQHIAVLEEENLDKK 832
>02_04_0633 - 24616563-24617279
Length = 238
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +2
Query: 455 IRTSSRRYHSTWPNTLWPGR----TWRGSRIVI 541
+R SS+ + +PN +WPG T+RG ++ I
Sbjct: 90 VRLSSQNQVTNYPNCIWPGTTVEVTYRGVQLAI 122
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 261 GCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHV 374
G +P P G HH EER D KR+ + ++ ++
Sbjct: 180 GLDTPQASRRPDGVHHARTDEERSPDSKRRKKVKITNL 217
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 261 GCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHV 374
G +P P G HH EER D KR+ + ++ ++
Sbjct: 180 GLDTPQASRRPDGVHHARTDEERSPDSKRRKKVKITNL 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,149,844
Number of Sequences: 37544
Number of extensions: 392899
Number of successful extensions: 1215
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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