Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b15
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    29   1.4  
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     26   9.6  
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232...    26   9.6  

>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 222 GLLGTFWKCARIGERKSPYVAVCCILMAFSILFLT*NCYK 341
           G+L   W  A++G    P   VC   + +   FL  +CY+
Sbjct: 42  GVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFLLSHCYR 81


>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = -3

Query: 256 ILAHFQNVPSKPVLFRSMILGKNDLR*AQVHINNSNTDKRL*KLNIALILC 104
           +L   +N+  KP+L  + ++GK ++  + +    S+  K+L +    ++ C
Sbjct: 315 LLNRLKNIDGKPILDFTQLVGKFEMTASSMSSKYSSATKKLKRKKTDMVAC 365


>02_02_0658 +
           12720873-12720906,12721201-12721664,12723069-12723227,
           12723308-12723424,12723570-12723721,12724594-12724685,
           12724787-12725464,12725551-12725803,12725804-12725888,
           12725969-12726037,12726489-12726668,12726989-12726994,
           12727526-12727624
          Length = 795

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 110 IMLIFLIKMISKFIKHILLFFKYS 39
           +ML +   M S F+ HILL F+Y+
Sbjct: 629 VMLCYYSVMRSTFVAHILLNFRYT 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,450,660
Number of Sequences: 37544
Number of extensions: 149186
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)