Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20b14
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1052 - 23962374-23963369 25 1.2
01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707 29 2.7
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 29 3.5
06_01_0805 + 6043248-6043551,6043654-6043755,6044858-6044964,604... 28 6.2
05_06_0278 + 26894802-26895362 28 6.2
02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251 28 6.2
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 27 8.2
05_06_0124 - 25822176-25822633,25822738-25825420 27 8.2
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 27 8.2
>08_02_1052 - 23962374-23963369
Length = 331
Score = 24.6 bits (51), Expect(2) = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 573 PIFCSVAAAWASMPARSPGAANTAAGR 493
P SVA+ WA+ PGAA GR
Sbjct: 95 PAAPSVASWWATTARYHPGAARLTLGR 121
Score = 24.2 bits (50), Expect(2) = 1.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 414 IIDARLNLGRRLPSSSCCVL 355
++DA L+LGRRL +S L
Sbjct: 123 VLDASLSLGRRLSETSLAAL 142
>01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707
Length = 293
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 184 VGGHLRPQVESRPASTAASLSTGPSLSEEAVTELTVGYIS 303
VGG + PA+ AA+ + G S+ E+ V E+T +S
Sbjct: 69 VGGEQKKAPGPSPAAAAAAAAAGASMMEQLVPEITTHALS 108
>02_05_0444 - 29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 201 ASGRVPPRINSCEPFNGTFTL*GGCHRAYRGLHLAYSYNRRCVA*WRVLRRAGHNNCSTG 380
++G PPR E + T G C + GLH RR WR +RR+ + S+
Sbjct: 936 STGERPPRRLDLEASSTTT---GACLSSAHGLHRLLFRRRRSAPHWRAIRRSQRPSSSSA 992
Query: 381 VS 386
+
Sbjct: 993 AA 994
>06_01_0805 +
6043248-6043551,6043654-6043755,6044858-6044964,
6045687-6045824,6046340-6046651
Length = 320
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 178 GRVGGHLRPQVESRPASTAASLSTGPSLSEEAVTELTVGYISRILTIGG 324
G+ G VES T TGPS +E A+ L G +++L GG
Sbjct: 115 GKSVGETTKMVESLSRDTWQHFKTGPSFTEAAMGRLAQG--TKVLAEGG 161
>05_06_0278 + 26894802-26895362
Length = 186
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 124 TDDANAGVVLR--LDVRGTRGRVGGHLRPQVESRPASTAASLSTGPS 258
TDD A LDV G GR GG P +RP + A + G S
Sbjct: 54 TDDGEAVAAASPGLDVPGQLGRSGGAPPPPQSNRPVTPLAGVDGGVS 100
>02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251
Length = 111
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 182 VWEATSGLRSSPAPHQQLRAFQRDLHSLRRLSQSLPWVTSRVFLQS 319
++EA G S+P Q Q LH+ + Q L W T+ +FL+S
Sbjct: 17 IYEAEVG--SAPKREDQAYQHQFILHAALDVVQDLAWATNTMFLKS 60
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 93 NESASRAPARSQTLRIVSDVLSTDRSSRHC 4
NE+ A A+S ++V + +S D S++HC
Sbjct: 36 NETQGTATAKSLNEKLVLETVSDDSSTQHC 65
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 72 VPDWRTRWLITAAGNRLN 125
V D R W+I+AAGNRLN
Sbjct: 388 VCDNRRLWIISAAGNRLN 405
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 192 PPPASGRVPPRINS--CEPFNGTFT 260
PPP GR+PPR S C NG T
Sbjct: 61 PPPVVGRMPPRTLSVRCAASNGRIT 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,727
Number of Sequences: 37544
Number of extensions: 342577
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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