Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b09
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    28   1.3  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    27   1.8  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    26   5.4  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 288 DSYIQIIKQKLDRPLSFVFMLLI 356
           D+YI+++K+KL+ P  F  +LL+
Sbjct: 139 DNYIEVLKEKLELPSCFQAILLV 161


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 206 KPRSYYYVISRPRSQGRAKISSTRFCKRLLHP 301
           + R Y  VI  P +Q +AKI + +F    +HP
Sbjct: 94  RARGYKCVIYMPNTQSQAKIDTLKFLGAEVHP 125


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 81  VITSIATKARTPKKINSFIFKYFRDRF 1
           +I     K R+ KK+ + I  YF D F
Sbjct: 124 IIVEFFAKVRSAKKVGNVILYYFEDAF 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,681
Number of Sequences: 5004
Number of extensions: 39260
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)