Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b09
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-5|CAA94784.1|   75|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   6.6  
Z70210-9|CAE17897.1|  403|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z70755-5|CAA94784.1|   75|Caenorhabditis elegans Hypothetical
           protein K06A4.6 protein.
          Length = 75

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 589 YSGSSCGPLCNCHGWC 542
           YSG+SC  + +C GWC
Sbjct: 14  YSGNSCFSISSCQGWC 29


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 607 SSFIGCYSGSSCGPLCNCHGWCC---FILLSFFGN 512
           ++ I    G + G  CN HG  C   F++L+F G+
Sbjct: 257 ANLIDLDDGKTSGQTCNVHGIACLNIFVMLAFIGS 291


>Z70210-9|CAE17897.1|  403|Caenorhabditis elegans Hypothetical
           protein K08H2.9 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 260 KISST-RFCKRLLHPNYKTKVR*AAKFRLYVANLM 361
           KIS T R CK  LH   K +      F+LY +NLM
Sbjct: 155 KISPTNRECKEFLHNRDKYRQAAGGPFQLYPSNLM 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,817
Number of Sequences: 27780
Number of extensions: 209681
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)