Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b06
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   9.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   9.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   9.9  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 561 MEQIQVPMPLPQP 599
           +EQI VP+P+P P
Sbjct: 108 IEQIPVPVPIPVP 120


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 561 MEQIQVPMPLPQP 599
           +EQI VP+P+P P
Sbjct: 108 IEQIPVPVPVPVP 120


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 561 MEQIQVPMPLPQP 599
           +EQI VP+P+P P
Sbjct: 108 IEQIPVPVPVPVP 120


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 561 MEQIQVPMPLPQP 599
           +EQI VP+P+P P
Sbjct: 108 IEQIPVPVPVPVP 120


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 561 MEQIQVPMPLPQP 599
           +EQI VP+P+P P
Sbjct: 341 IEQIPVPVPVPVP 353


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 214 NHSHQYYDDNDY 249
           N+S+ YY++N+Y
Sbjct: 312 NYSNNYYNNNNY 323



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 80  KPRWRRKQPRDSNSLLSVCNQS 15
           + R R K+P+  +SL + CN S
Sbjct: 293 RERERSKEPKIISSLSNSCNYS 314


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 561 MEQIQVPMPLP 593
           +EQI VP+P+P
Sbjct: 329 IEQIPVPVPIP 339


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 561 MEQIQVPMPLP 593
           +EQI VP+P+P
Sbjct: 340 IEQIPVPVPIP 350


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 561 MEQIQVPMPLP 593
           +EQI VP+P+P
Sbjct: 340 IEQIPVPVPIP 350


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 561 MEQIQVPMPLP 593
           +EQI VP+P+P
Sbjct: 329 IEQIPVPVPIP 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,437
Number of Sequences: 438
Number of extensions: 1493
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)