Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20b03
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 29 0.46
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 1.1
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 27 2.4
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 2.4
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 27 2.4
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 26 4.3
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 5.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.6
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 25 7.5
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.5
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 7.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 7.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 25 9.9
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 527 SPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMET 664
SP ++ +T R P L + D M DS +KV+D+ T
Sbjct: 251 SPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGADSLLKVWDLRT 296
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 518 FYGSPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMET 664
++ +P Y F + LS L+ D+ G D S+KV+D+E+
Sbjct: 73 WHKTPNGVEYIKEFHAHNAMLLSAELSQDERLFITGADDKSLKVFDVES 121
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 442 VGYFDPVNCTVHTSSVANSFFDHAVFNGV 356
VG + P + T ++ + FF HA++ G+
Sbjct: 461 VGIYGPPTKAMVTGNILHDFFQHALYRGI 489
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 2.4
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +2
Query: 587 LGLTADQTKMAVGYGDSSIKVYDMET 664
L ++ +++A+ Y D +++ YD++T
Sbjct: 439 LSMSVTDSRIAIAYNDGNVRFYDLDT 464
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 494 ALESFNMQFYGSPGISSYSTP-----FITQRSPALSLGLTADQTKMAVGYGDSSIKVYDM 658
ALE F+ +FY + + ++ + S+ + D + +A GD + KV+D+
Sbjct: 150 ALELFDSRFYDRQNEENQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDL 209
Query: 659 ET 664
T
Sbjct: 210 ST 211
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/36 (22%), Positives = 19/36 (52%)
Frame = +2
Query: 278 LIQMRHGSTGTVLCTLRNVQFPPKPVYAIEYSMVEE 385
++ M H ++ T+R+ P +P Y ++Y + +
Sbjct: 146 VLAMEHRDNSAIISTVRDPLHPEEPPYVVQYREISD 181
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 385 KSLLRCLYGRCNLQDRNTQRCG 450
KSL+ + +CNLQD +CG
Sbjct: 267 KSLIDGVLQQCNLQDARASKCG 288
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 581 LSLGLTADQTKMAVGYGDSSIKVYDMET 664
L L L D TK A GD I+V+D+ T
Sbjct: 60 LDLDLVYDSTKFASCGGDKFIQVWDVNT 87
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 20 LSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFLKGTANNIT 184
LS ++ ++ YK + P+I + E+ V +DNF FL G N +T
Sbjct: 906 LSSILEMLRSRYKKFKKPIIDLNDIYIDESNERVVKGKSKDNFEYFLSG--NTVT 958
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 421 NCTVHTSSVANSFFDHAVFNGVHWLGRKL 335
NC T AN + + + NG+ LGR +
Sbjct: 559 NCGAFTLEEANEYINLGILNGMFVLGRSI 587
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 397 VANSFFDHAVFNGVHWLGRKLH 332
+ NSF + +G +W+GR H
Sbjct: 316 IQNSFSSSLIADGYYWMGRAYH 337
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 350 PVYAIEYSMVEERVCYAACMDGAIYRIEIPNVVAPIEEPPLFCIRADPA 496
P Y + +S EE ACM ++ +P + I+ PL I+ A
Sbjct: 304 PYYIVRFSTEEECSAINACMGRPVF--YVPTMANKIDPEPLKYIKGSDA 350
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 449 APIEEPPLFCIRADPALESFNMQFYGSPGISSYSTP 556
AP +P DPA ++ + SP +S STP
Sbjct: 248 APTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 437 PNVVAPIEEPPLFCIRADPA-LESFNMQFYGSPGISSYSTPFITQRSPAL 583
PNV AP+ P F I + PA + + S S P T +SP++
Sbjct: 435 PNVAAPVFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSV 484
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +2
Query: 509 NMQFYGSPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSI 643
N YG+ + PF+ Q ++ + AD +G G S I
Sbjct: 299 NFVSYGAQVFPATQMPFLQQPKVTQNISIPADMVGCIIGRGGSKI 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,396
Number of Sequences: 5004
Number of extensions: 58553
Number of successful extensions: 174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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