Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20b03
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 30 1.5
07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754... 30 1.9
03_06_0288 + 32865414-32867249 29 2.5
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881... 29 3.3
10_01_0026 - 351737-353443 28 5.9
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072... 28 5.9
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 28 7.7
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +2
Query: 437 PNVVAPIEEPPLFCIRADPALESFNMQFYGSPGISSYSTPFITQ----RS------PALS 586
P+VVA E PP F + +D + N +PG SS +P +Q RS ++
Sbjct: 379 PSVVA--ELPPSFDVDSDQISQPSNGNKSDAPGTSSERSPLESQSRQVRSCTKVIMQGMA 436
Query: 587 LGLTADQTKMAVGYGDSSIKVYDM 658
+G D TK+ GYGD K+ +M
Sbjct: 437 VGRAVDLTKLN-GYGDLRSKLEEM 459
>07_03_0589 +
19773904-19774032,19774224-19774298,19774947-19775444,
19775898-19776263,19776636-19776727,19776826-19776872,
19776953-19777014,19778461-19778498,19779354-19779366
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 83 YPLFHKTRLKEKKVYAWIQDNFAKFLKGTANNITYNRWYFTENG 214
Y LFH L E K++ + + L G NN+ W + ENG
Sbjct: 223 YKLFHLLCLPEMKIFL----DTTRLLAGKTNNLLEELWNYIENG 262
>03_06_0288 + 32865414-32867249
Length = 611
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 431 RSCKLHRPYKQRSKLFLRPCCIQWRTLAWAETAH 330
RS +L R YK +L ++P I WRTL A H
Sbjct: 387 RSGQLERAYKFIDELPIKPTAILWRTLLSACAGH 420
>07_03_0590 +
19786960-19787136,19787198-19787272,19787676-19788173,
19788605-19788970,19788995-19789009
Length = 376
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 8 KNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFLKGTANNITY 187
+N L +Y+++ +N + + Y L H L E K++ + + L G NN+
Sbjct: 216 ENTCLHKYLEDNLSPSQNHLDYI--YKLIHLLCLPEMKIFL----DTIRLLAGKTNNLLE 269
Query: 188 NRWYFTENG 214
WY+ E+G
Sbjct: 270 ELWYYIEDG 278
>10_01_0026 - 351737-353443
Length = 568
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*I-QHGRRKSLLRCLYGRCNL 423
YSA+ +E+ A A AS+RH Q + ++R L G +L
Sbjct: 480 YSAVEVERMAACAAASIRHSARQRPKMSQIVRALEGDASL 519
>04_04_1073 - 30606472-30606515,30606897-30606988,30607152-30607243,
30607362-30607469,30607614-30607748,30607826-30607871,
30608320-30608420,30608512-30608649,30608721-30608819,
30608920-30609036,30609941-30610102,30610271-30610330,
30611120-30611216,30611238-30611296,30611364-30611480,
30611922-30612020,30612115-30612180,30612405-30612542,
30612659-30612742,30612820-30612892,30612937-30612992,
30613074-30613182,30613253-30613335,30613406-30613489,
30613679-30613750,30613827-30613904,30613984-30614067,
30614142-30614212,30614497-30614566,30614866-30614955,
30615046-30615177,30615250-30615350,30615634-30615691,
30615762-30615878,30617981-30618133
Length = 1094
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 368 IQWRTLAWAETAHFSMYIALYLYYRGASELSLMNVLQ*HEIRLENT 231
+ WR L A F + + L L +RG S L L N Q H +++NT
Sbjct: 930 VMWRNLIIM--ALFQVIVLLTLNFRGTSLLQLKNDNQAHADKVKNT 973
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 513 MLNDSRAGSALIQNSGGSSIGATTLG 436
+++D+ G A++ G SSIG TTLG
Sbjct: 191 LIDDAVTGRAIVSIVGESSIGKTTLG 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,991
Number of Sequences: 37544
Number of extensions: 364246
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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