Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20b02
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   3.4  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    25   6.0  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    24   7.9  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 341 FCVVRTLRSDRLASSSTGRDGVNVFNIFFIPLYLCLTKFHDMMKGSF 201
           FCV  +L+ D + ++    DGV + ++  I       K HDM   +F
Sbjct: 595 FCVDISLQDDIVRNNHCFTDGVGMASLSVIRRLSLEVKNHDMFPSAF 641


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 14  VCNAKLKFNIIRFTSRDAPKNA 79
           VCNA L  ++ +F SRD   NA
Sbjct: 322 VCNAVLLAHVQKFNSRDPRANA 343


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 382 CIYYYSCIFYVAFVFVLFV 326
           C + Y+CIF++  VF   +
Sbjct: 343 CFWVYACIFFLTRVFCFLI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,629
Number of Sequences: 5004
Number of extensions: 32324
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)