Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20a24
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600...    30   2.2  
02_04_0055 - 19290975-19292312                                         30   2.2  
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049...    28   6.6  
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    28   6.6  
02_03_0240 - 16739628-16740369,16740392-16740978                       28   6.6  
03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308...    28   8.8  

>04_04_0076 +
           22558105-22558261,22558356-22558405,22559837-22560044,
           22560112-22560237,22560469-22560567,22560729-22561405,
           22561483-22561731,22561808-22561936,22562021-22562089,
           22562183-22562256,22563086-22563098,22563361-22563468,
           22563541-22563651,22563725-22563811,22564043-22564068,
           22564840-22564906,22565123-22565212,22565295-22565387,
           22565515-22565604,22565699-22565761,22566349-22566447
          Length = 894

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 79  NEKAKEDYIISIYRKLISEKCVEQRMLSSKQQYVGFKCSSASL*RSY 219
           N KA E++   ++   I  +C EQ ++S KQ+ +  K     + +SY
Sbjct: 153 NSKAFEEFNCLLHDSSIKLECAEQMIISGKQEMLRIKQEKEEMDQSY 199


>02_04_0055 - 19290975-19292312
          Length = 445

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 572 FLCLVSRTFRDITWRRHEPRVS*GPSFNVADTV*HLVQHASRSEDDEENNNGHCGHK-AV 396
           FL  +S  F D T RR E +    P  N    + HL        DD+++++    H+  +
Sbjct: 283 FLERISNGFGDCTLRRVESQRE--PKPNKMRALGHLGGGGGGGADDDDDDDDVYQHQHRI 340

Query: 395 AGASFIHGTGPAPS 354
             A F  G GP PS
Sbjct: 341 KCAGFFGGMGPTPS 354


>07_03_0008 +
           12303536-12303893,12303910-12304176,12304635-12304951,
           12304975-12305819,12305859-12306069
          Length = 665

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 447 ATGVLDKMLYSIGYVKARALAHTRFVPT 530
           AT +++KM+ +IG+ K R L H R + T
Sbjct: 17  ATNLIEKMISNIGWSKERLLTHQRGMHT 44


>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 552 SRNQTEETETIHGIMSTSENDAWDKQH-AYDSHGDFQIDYIEEIVE 686
           S N + +  T      T + D+WD QH  YD  G   + Y ++I E
Sbjct: 122 SNNISSDAFTSSRSNGTKDTDSWDMQHLEYDHPGLMLLPYDDDIEE 167


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 519 FVPTPGDITECSRNQTEETETIHGIMSTSENDAWDKQHAYDSHGDFQIDYIEEIVEG 689
           +VP P  +T  + +  E+  T+ G M  +  +   K H     G   +D  +E+V G
Sbjct: 343 YVPRPAPVTATADDGDEQAATMGGEMMITSTNTSTKTHPSTVFGP-TLDSFDEVVRG 398


>03_01_0397 +
           3086142-3086489,3087097-3087252,3088043-3088201,
           3088305-3088388,3089266-3089348,3089486-3089531,
           3089825-3089912,3090009-3090178,3090317-3090430,
           3090497-3090604,3090987-3091202
          Length = 523

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 346 KHFSLAVRRKTTHIGISDIIWSMNEMKLYDVCN 248
           +HF    +RK  H    DI+W   +  +Y VCN
Sbjct: 212 EHFKDPTKRKVMHGADRDIMWLQRDFHIY-VCN 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922,045
Number of Sequences: 37544
Number of extensions: 383476
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)