Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20a24
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024831-8|AAK72079.3|  362|Caenorhabditis elegans Serpentine re...    29   2.6  
AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    29   4.5  
Z78412-2|CAB01650.1|  169|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AC024831-8|AAK72079.3|  362|Caenorhabditis elegans Serpentine
           receptor, class t protein24 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 695 RPSLNNFFDVVDLKISVAVVCMLFVPCVIFTSGHNTMNSLGFLCLVSRTFRDI 537
           RP +  +F  V + + V++  M++VPC+I     + M S  +  +V     DI
Sbjct: 41  RPYIGGYFLTVGIVLMVSMFQMIYVPCLIVICKSDLMKSSCYKIMVWLGILDI 93


>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 94  EDYIISIYRKLISEKCVEQRMLSSKQQ 174
           +D  ++IYR +I EKC+ Q +LS  Q+
Sbjct: 346 DDAEMTIYRDVIIEKCLLQNLLSMSQE 372


>Z78412-2|CAB01650.1|  169|Caenorhabditis elegans Hypothetical
           protein M176.3 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -1

Query: 293 YHLEH----ERNEIIRCLQHHPNHVL 228
           YH E+      NEI+RCLQ +P  VL
Sbjct: 120 YHRENVCQDNENEIVRCLQENPGRVL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,156
Number of Sequences: 27780
Number of extensions: 342009
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)