Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20a18
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   296   2e-81
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   287   1e-78
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   153   2e-38
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   132   6e-32
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    30   0.34 
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.5  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   9.5  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  296 bits (726), Expect = 2e-81
 Identities = 129/195 (66%), Positives = 158/195 (81%)
 Frame = +2

Query: 71  MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 250
           MRE ISIH GQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 251 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 430
           +VPR++++DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 431 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQISTA 610
           ++R++AD C+GLQGFL+              LL+ERL+++Y KKSKL+F++YPAPQ+ST+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180

Query: 611 VVEPYNSILTTHTTL 655
           VVEPYNS+LTTH TL
Sbjct: 181 VVEPYNSVLTTHATL 195


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  287 bits (704), Expect = 1e-78
 Identities = 126/199 (63%), Positives = 158/199 (79%), Gaps = 4/199 (2%)
 Frame = +2

Query: 71  MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DSFNTFFSET 238
           MRE IS+H GQAGVQIGNACWELYCLEHGI PDG    +  V   +    D F TFFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 239 GAGKHVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 418
           G GK VPR++++DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 419 LVLDRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 598
            VL+R+R++AD C+GLQGFL+              LL+ERL+++YGKKS L+F++YPAPQ
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180

Query: 599 ISTAVVEPYNSILTTHTTL 655
           +ST+VVEPYNS+LTTH TL
Sbjct: 181 VSTSVVEPYNSVLTTHATL 199


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  153 bits (372), Expect = 2e-38
 Identities = 76/192 (39%), Positives = 107/192 (55%)
 Frame = +2

Query: 71  MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 250
           MRE + I AGQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58

Query: 251 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 430
           +VPRAV +DLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D VLD
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118

Query: 431 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQISTA 610
            VR+ A+ C  LQGF +              LL+ ++  +Y  +    F++ PAP+ S  
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDT 178

Query: 611 VVEPYNSILTTH 646
           VVEPYN+ L+ H
Sbjct: 179 VVEPYNATLSMH 190


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  132 bits (318), Expect = 6e-32
 Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 3/191 (1%)
 Frame = +2

Query: 74  RECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKH 253
           RE I++ AGQ G QIG+  W+  CLEHGI PDG + S  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 254 VPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 427
           +PRA+ IDLEP VV+ + + TY  L++PE ++  K    A NN+A G Y+  + I + ++
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119

Query: 428 DRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-IS 604
           D + + AD    L+GF +               L+ERL+  Y KK    ++++P  Q +S
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179

Query: 605 TAVVEPYNSIL 637
             VV+PYNS+L
Sbjct: 180 DVVVQPYNSLL 190


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 549 STERRSIRSDAKPDPVPPPNEWKIRKP 469
           S +RR ++++  PD V PP  W +R P
Sbjct: 238 SDKRRFLKTNYSPDDVAPPPNWVLRYP 264


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 162 WMPCSRQYSSQHALPICTPAWPAWIDMHS 76
           W P        H +PI TPA+P+    H+
Sbjct: 286 WNPKLYPSDKAHRMPIITPAYPSMCATHN 314


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 155 HVRDNTAPNTRCRFAHQPG 99
           ++R+   PN  C + H+PG
Sbjct: 208 YLRNQQCPNPSCMYLHEPG 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,600
Number of Sequences: 5004
Number of extensions: 55265
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)