Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20a15
(513 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 4.3
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 4.3
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 4.3
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 4.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 4.3
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 4.3
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 4.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 4.3
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 22 4.3
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 5.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 5.7
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 5.7
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 5.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 5.7
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 5.7
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 5.7
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 5.7
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 5.7
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 5.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 7.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 7.5
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 7.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 217 SSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 274
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 228 SSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 285
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 228 SSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 285
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 217 SSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 274
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 4.3
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = -2
Query: 395 SLRYSRAHSCS--TSRLLLHGSRAYLRTAN-------TMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS +R R Y + N ++K SR+R R+Q N
Sbjct: 228 SSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKN 285
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 228 SSRYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 285
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 217 SSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 274
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 233 SSRYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKN 290
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.8 bits (44), Expect = 4.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR-----------LLLHGSRAYLRTANTMLNNKHLSRARNRDQLDRSN 249
S RYSR SCS R LH + L T + K SR+R R+Q N
Sbjct: 228 SSRYSRERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERT--SRKRYSRSREREQKSYKN 285
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 217 SSRYSRERSCSRDR 230
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 217 SSRYSRERSCSRDR 230
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 395 SLRYSRAHSCSTSR 354
S RYSR SCS R
Sbjct: 228 SSRYSRERSCSRDR 241
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.0 bits (42), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 192 VWVVRGLCLAHAVPWPIEWIAAVKLVPVACTREVLI 299
VW++ C+ V W + + L P A +LI
Sbjct: 216 VWIMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLI 251
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.0 bits (42), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 192 VWVVRGLCLAHAVPWPIEWIAAVKLVPVACTREVLI 299
VW++ C+ V W + + L P A +LI
Sbjct: 269 VWIMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLI 304
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.0 bits (42), Expect = 7.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -2
Query: 320 TANTMLNNKHLSRARNRDQLDRSNPFYRPG 231
TA N A N+ QL PF PG
Sbjct: 1107 TAAAAATNIRPGTADNKPQLKPQKPFTSPG 1136
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 303 LPCLLRMSRPGKKITKKTILGGNR 326
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 303 LPCLLRMSRPGKKITKKTILGGNR 326
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 303 LPCLLRMSRPGKKITKKTILGGNR 326
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 303 LPCLLRMSRPGKKITKKTILGGNR 326
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 303 LPCLLRMSRPGKKITKKTILGGNR 326
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 303 LPCLLRMSRPGKKITKKTILGGNR 326
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 371 LPCLLRMSRPGKKITKKTILGGNR 394
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 404 LQCSLRYSRAHSCSTSRLLLHGSR 333
L C LR SR T + +L G+R
Sbjct: 371 LPCLLRMSRPGKKITKKTILGGNR 394
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,208
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 30
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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