Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20a10
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    31   0.14 
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   1.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   2.3  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   2.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.0  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   3.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   3.9  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   6.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   9.1  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 174  ICMQTVCNKNG-LQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCASVE 338
            +C Q     +G +QC   C  W HY C+    G   DI + L      CPDC S E
Sbjct: 1458 LCRQPFAISDGTVQCHN-CLEWFHYECV----GLSSDIVSTLSNY--ACPDCCSKE 1506



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 207  LQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPD 323
            ++C+ +C  W H  C+K +  K++  +    K ICP  D
Sbjct: 1185 IECE-LCHEWYHAKCMKMSKKKLRADE----KFICPICD 1218


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 248 GVMSPSFANTLALQAIFIANCLHANLARIFDFTITCSVHFIFISNIKFTFVWLA 87
           GV+ P   + L+L    I +C+      +F F   CS  F+F+      F W A
Sbjct: 400 GVVRPLLGSQLSLGFQLITSCITFVDFLVFAFLFDCS-KFVFLKYQPIPFEWYA 452


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 203 IFIANCLHANLARIFDFTITCSVHFIFISNIKFTF 99
           I+I NC+  N AR F   + C++  +F S ++  +
Sbjct: 189 IWINNCVGLNNARYFFLFLLCTIQLLFHSILRLGY 223


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -1

Query: 245 VMSPSFANTLALQAIFIANCLHANLARIFDFTITCSVHFIFISNIKFTFVWLAFCKLC 72
           V S S A  + L A+F+A C+      +       S+    I       +WL +  +C
Sbjct: 189 VTSISLAKCVKLTAVFLAQCVKVTAVFLAQCVKVISIGLFNIRREMMIIIWLLWLIIC 246


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 CKICMQTVCNKNGLQCQGVCKRWAHYACL 254
           C IC++T  N +  +    CK + H AC+
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACI 794


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 275 SGYQSWLNKNYLSMSRLCFGRAESQRKSSMQNEKK 379
           S Y +WLN +  +   +   R   Q++  M+N ++
Sbjct: 188 SQYDAWLNGSVSNKKSIAAAREAEQKRKEMENRRR 222


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 207  LQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPD 323
            ++C+ +C  W H  CLK +  K++  +    K  CP  D
Sbjct: 1110 IECE-ICHEWYHAKCLKMSKKKLRQDE----KFTCPICD 1143


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 535 GLTQGGFGPHGMLWSDSADSEE 470
           GL   G+GPH  +W D+  +++
Sbjct: 318 GLLAVGWGPHATIWKDALRTKQ 339


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = +3

Query: 555 PKCP-----PPSFKNPSVKHSCGPDNQ 620
           P CP     P S  +P VKH+C P ++
Sbjct: 640 PDCPYLCVLPKSCHHPQVKHNCHPTSE 666


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 248 LPEIHSWKNSGYQSWLNKNYLSMSRLCFG 334
           L  +HS+ N+G   W++  Y+S     FG
Sbjct: 577 LNHLHSFPNNGLNGWVSYIYVSGDSSYFG 605


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 369 FCIELFLWLSARPKHNRDMDR 307
           FC+ LFL  S  PK  + +DR
Sbjct: 409 FCLRLFLLKSHLPKETQQIDR 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,175
Number of Sequences: 5004
Number of extensions: 55053
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)