Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20a08
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     29   0.52 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    29   0.69 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.69 
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    28   0.91 
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   2.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.5  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 419 PFLLLCLYGMLLVQPPFQQSSSNLTTLYKLCLCHSFY 309
           PFLL+C++  +   PPF    +   T++ L L HS +
Sbjct: 493 PFLLICIFFYIQSSPPFYYGYALFPTIF-LQLIHSIF 528


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 142 FIFVFVGSHKQCNWGRYNTTCKIEHHFIFSTNVN 41
           F +   G H Q  W   ++T KIE+ + F  +++
Sbjct: 411 FTYTISGKHIQVPWNALHSTTKIENEYTFDESIS 444


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 484 K*FCFCFIQPIYYFIISFGHFRLSYFSVFMECYLSNLHSSSLL 356
           K F + F   +YYFIISF +     FS+  E  +S+ ++SS+L
Sbjct: 2   KLFLYHFTFIVYYFIISFSY----AFSIKQEIIVSSHNASSIL 40


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 398 KDREVRKAKVAKRNNEIVNRLNKT 469
           KD+E +KA++ K  NE+ N L  T
Sbjct: 209 KDKEAKKAQLRKTRNEVSNMLRST 232


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 80  TSSVVSPPVTLFMGADKNENEDLIKWGWPEDVW 178
           T + ++P     M A  N    L+K G P DVW
Sbjct: 481 TINYMAPEALTDMNAHTNSGVKLVKLGRPSDVW 513


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 224 TPGQTIDDIPNLVLDDACQLVKANS 298
           TP  +ID+I  LV+D  C L K +S
Sbjct: 274 TPSLSIDEIDPLVVDCMCVLWKKSS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,453
Number of Sequences: 5004
Number of extensions: 44982
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)