Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20a08
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.0  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 425 LSPFLLLCLYGMLLVQPPFQQSSSNLTTLYKLCLCHSFY 309
           L  FLLL ++  ++V+      +S   TL   C   S+Y
Sbjct: 603 LGLFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPSYY 641


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 476 LFLFYSAYLLFHYFFWPLSP 417
           ++LF S  L+  YF  P+ P
Sbjct: 8   IYLFLSVILITSYFVTPVMP 27


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  YCMFTFVEKIKWC 71
           YC+F+F+  I +C
Sbjct: 148 YCLFSFLNTIVYC 160


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = +2

Query: 146 LIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTI 241
           LI W W    W   + ++  HV+     G  +
Sbjct: 173 LIHWIWTPHGWMRRNVLNKQHVHFHDYTGSVV 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,306
Number of Sequences: 438
Number of extensions: 2986
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)