Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1p23
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.71
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 28 1.2
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 28 1.2
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 28 1.6
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 27 2.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.9
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.9
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 3.8
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 26 5.0
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 26 6.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 6.6
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 8.7
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 8.7
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.71
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 61 DDPDENPSETTEIKNVLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTESISEHIP 240
D E+ S +E ++ + +++ T +KK+G+ S + +S ++S SE
Sbjct: 165 DSSSESSSSESESESSSSESEEEEEVVEKT----EEKKEGSSESSSDSESSSDSSSESGD 220
Query: 241 SRLECLSESENSKAQE 288
S SESE+S E
Sbjct: 221 SDSSSDSESESSSEDE 236
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 163 NDKKQGTQLQSDNEDSQTESISEHIPSRLECLSESENSKAQEIVIVKPE 309
+ + + S++E S +ES S S SES +S+++E VIVK E
Sbjct: 84 SSESESESSSSESESSSSESESSSSESESSS-SESSSSESEEEVIVKTE 131
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 467 SAKLTGLSSLIKCMSTFTSIGQEVLNLF 384
S K G+++++KCM F ++ E +N+F
Sbjct: 297 SEKPNGINAIMKCMKNFANLKVESMNVF 324
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 442 DESPVNLALSSDKERTQNVSIDSPQLQSEPYMDQSLQSENYNDSLNNQSN 591
D+ P + + E Q DS Q QSL EN ND++ +++N
Sbjct: 53 DQQPSQQVRNMEDEANQYEQTDSSSDQEVMNEKQSLDKENRNDNIPHENN 102
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 382 PNKLSTSWPI--DVNVDMHLISDESPVNLALSSDKERTQNV-SID-SPQLQSEPYMDQSL 549
P+ TS+ + +V H SD SP+ + S+ KE +NV SID S S + SL
Sbjct: 107 PDHQETSYSLLEGYSVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSL 166
Query: 550 QSE 558
Q E
Sbjct: 167 QHE 169
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 64 DPDENPSETTEIKNVLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNED 207
DP + + T +N LP++V+ Q I+ GE +K L S ED
Sbjct: 58 DPIDKNNLNTNTENNLPNIVNFQNIS-SANSGEIKQKDNEILFSSTED 104
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 190 VIGFPVFYRFLHRLSLRLSVENVRHPEEHSLFP*FPMDFR 71
+IG +F H+ S R+ E ++ EE+ P P +FR
Sbjct: 259 LIGLGIFLWKRHQRSKRIKAERMQEVEEYGFNPNQPSNFR 298
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 124 HSQQIAVGTTDGENDKKQGTQLQSDNEDSQTES-ISEHIPSRLECLSESENSKAQ 285
HS+ V DG N K++ +++ S E T S + IP E ++ S S ++
Sbjct: 519 HSRWCRVIHKDGRNSKRESSKINSVTESESTASPAASVIPVGTESVTSSTQSDSR 573
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +1
Query: 103 NVLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTESISEHIPSRLE 252
N+ +V+ + + T + K GT + +NE+ ++ EH P E
Sbjct: 92 NMPGSLVYECSVLIANTANSLESKDGTLNEEENEEMESSINEEHKPGTNE 141
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 160 ENDKKQGTQLQSDNEDSQTESISEHIPSRLECLSESE 270
+NDKK +L D +D + E +E SESE
Sbjct: 27 KNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESE 63
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 262 PKDILIWREYALILIQFDCLH--CHFVIGFPVFYRFLHRLSLRLS 134
P +IW + L D H H + + +FYRF+H++ R S
Sbjct: 131 PVTKMIW-QITLFFFLEDTWHYWAHRLFHYGIFYRFIHKVHHRYS 174
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +1
Query: 379 DPNKLSTSWPIDVNVDMHLISDESPVNLALSSDKERTQ 492
D ++L ++N ++ + + +NLAL +DK++T+
Sbjct: 963 DDSELWADLGNEINSEIGFLKEPDTMNLALDADKDKTK 1000
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = -1
Query: 479 LSEDSAKLTGLSSLIKCMSTF----TSIGQEVLNL--FGSFV*FSLSEESGGFMGDGALR 318
LSE S+ LTG SS + S F S+ + + F SF F E++ + D +L+
Sbjct: 249 LSESSSSLTGSSSALLSQSEFLGSVPSLSDSIATVDPFFSFESFETDEKARSLLMDASLK 308
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 148 TTDGENDKKQGTQLQSDNEDSQTESISEHIPSRL 249
T DG++ KK QLQ + + S++ H P R+
Sbjct: 114 TVDGDS-KKHSLQLQEEEKSSESLDSHTHPPKRV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,727
Number of Sequences: 5004
Number of extensions: 62573
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
- SilkBase 1999-2023 -