Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p21
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated, ...    31   2.9  
BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated, ...    31   2.9  
AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated ...    31   2.9  

>BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 379

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 298 RQALKPDPLENXHIXTGPLHAKGLXKPLIFTGGVXAAXLLGWXIWEYXNXRVHASS 465
           R AL P P+E       P   + L KPL FT G          IW+Y + +    S
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQS 130


>BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 329

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 298 RQALKPDPLENXHIXTGPLHAKGLXKPLIFTGGVXAAXLLGWXIWEYXNXRVHASS 465
           R AL P P+E       P   + L KPL FT G          IW+Y + +    S
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQS 130


>AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated
           rhomboid-like protein protein.
          Length = 379

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 298 RQALKPDPLENXHIXTGPLHAKGLXKPLIFTGGVXAAXLLGWXIWEYXNXRVHASS 465
           R AL P P+E       P   + L KPL FT G          IW+Y + +    S
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQS 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,140,933
Number of Sequences: 237096
Number of extensions: 755603
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)