Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p16
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   2.0  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   3.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   3.5  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   6.1  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    24   8.0  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 377 YDHNTDFFSVCTFDTLI 327
           YDH   F   CTFD +I
Sbjct: 134 YDHAKSFLDTCTFDVVI 150


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 395 FLIRTFYDHNTDFFSVCTFDTLIFM 321
           FL + FYDH T F   C  +  + +
Sbjct: 37  FLNKAFYDHTTRFLPFCDLNPALLV 61


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 398 YFLIRTFYDHNTDFFSVCTFDTLIFMTILTIFKTMYITRIYNVH*NRHLNLENCKATTHS 219
           Y++ +TF  H+ D+ ++      +F   L   K + I    N       NL + K+T H+
Sbjct: 126 YYMDKTFLSHHPDYPTIEELSLSLFREKLMAVKNIQIP-FLNSLLQSFENLHSSKSTDHA 184

Query: 218 W 216
           +
Sbjct: 185 Y 185


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 377 YDHNTDFFSVCTFDTLIFMTILTIFKTMYIT 285
           Y     +F+V  F+  I   ++ +FKT+Y T
Sbjct: 663 YPEKHFYFAVDNFNVFISKEVVRLFKTLYET 693


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 INNTVLLSNCCGK 152
           +NNT+LL +C GK
Sbjct: 96  LNNTILLKSCLGK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,201
Number of Sequences: 5004
Number of extensions: 27247
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)