Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p16
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    29   1.3  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   3.0  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    27   4.0  

>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 410 FFFSYFLIRTFYD---HNTDFFSVCTFDTLIFMTILTIFKTMYITRI 279
           FFF++ +I +F+      T F  VC F ++  + I+ I   +YI  I
Sbjct: 31  FFFNFLIITSFFTDKKQKTSFNLVCVFRSINNVAIIFILTIVYIPAI 77


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
            protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +3

Query: 9    RKTRQEEML--LISSDL*HTFTFTFQRF-SLFLSLI*EINNTVLLSNCCGKN 155
            RK R E++L  + +S +  TF  + Q F S+FLS+I   N+TV +  C  +N
Sbjct: 1228 RKMRFEKLLDVITASRIARTFGGSMQSFFSIFLSIIVSNNDTVEIPLCWFEN 1279


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical protein
            D2021.1 protein.
          Length = 1168

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 204  LIFLP*VGGRFTVFKI*MSVSVNIVNTSYIHSFKYCQYGHEYQSIK---SANGKKIS 365
            ++F+  +GG+FTVF +  + S  I     +  F +      Y ++K   +AN  K+S
Sbjct: 1109 ILFVKDIGGKFTVFCVYCAKSQGIEGFIALQQFSFTDLYSIYDNMKYIPAANNNKMS 1165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,443,399
Number of Sequences: 27780
Number of extensions: 151322
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)