Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p14
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    82   1e-16
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   2.9  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    27   3.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.8  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    25   8.8  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   8.8  

>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
 Frame = +1

Query: 307 WVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKE---- 474
           WVFGYGSL W+P   Y  S+  ++KG+ RRFW  +  HRGT + PG V TLI  +E    
Sbjct: 11  WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQF 70

Query: 475 ---GIT------WGKAFLVAAENSVAL-PYLTKRECKLGGYKTCVVNFHPTPFLPATRAD 624
                T      WG AF + A+ +  +  YL  RE       +  V  H    +P     
Sbjct: 71  SDWSFTPFDEGCWGMAFRIPAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVL--- 127

Query: 625 KKDALLYIALPENKHWLGSAPLPDIAKQILECRGPSGSNVEYL 753
            ++ L+Y+   ++  +  S  L  +AK I   RG SG N  YL
Sbjct: 128 -ENCLVYVGTSKSPQFQPSDDLTQMAKIISTRRGKSGDNFVYL 169


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 496 FLVAAENSVALPYLTKRECKLGGYKTCVVNFHPTPFLP 609
           F+VAA +  A  Y  K E     Y+  +  ++P PF P
Sbjct: 724 FIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAP 761


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 598 PFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQIL 714
           P + AT  + +    ++A PEN+ +    P P    QIL
Sbjct: 263 PIIAATPLNSQTQASWVAQPENQAYANLIPSPPTTSQIL 301


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 493  AFLVAAENSVA--LPYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALPENK 666
            AFLV  +      L Y  +   KLGG+K+ V+N             KK  L  +     +
Sbjct: 1150 AFLVTTDTKAQGFLAYALQEFLKLGGFKSAVIN-------------KKKGLTVV----TE 1192

Query: 667  HWLGSAPLPDIAKQIL 714
            HW+    LPD++K++L
Sbjct: 1193 HWMS---LPDLSKRVL 1205


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 540 GEIRQCYAVFCGHQKRFTPSYSFL 469
           G + + YA +CGH K   P Y  L
Sbjct: 41  GALIEFYATWCGHCKSLAPVYEEL 64


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 522 YAVFCGHQKRFTPSYSFLVLY*SGDATRLI 433
           YA +CGH K   P+Y  L    S D+  ++
Sbjct: 381 YAPWCGHCKNLAPTYEKLAEEYSDDSNVVV 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,241
Number of Sequences: 5004
Number of extensions: 74597
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)