Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p14
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769...   120   9e-28
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307...    58   8e-09
01_06_0054 - 26027072-26028463                                         31   0.75 
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136...    29   3.0  
08_01_1050 - 10649434-10651917                                         29   4.0  
06_03_0630 + 22926652-22928133                                         29   4.0  
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    28   7.0  
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782...    28   9.2  

>02_03_0153 -
           15776359-15776516,15776742-15776821,15776912-15776983,
           15777070-15777110,15777201-15777257,15777344-15777400,
           15778441-15778517,15778652-15778760
          Length = 216

 Score =  120 bits (290), Expect = 9e-28
 Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
 Frame = +1

Query: 307 WVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKEGITW 486
           WVFGYGSL WNPGF++ + + G+VKG+ R F      HRGT + P R  TL  D+E I W
Sbjct: 4   WVFGYGSLIWNPGFDFDEKILGFVKGYKRTFNLACIDHRGTPEHPARTCTLESDEEAICW 63

Query: 487 GKAFLVAA---ENSVALPYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALP 657
           G A+ V     +   A+ YL +REC+    +   V+F+      + +      L++++ P
Sbjct: 64  GIAYCVKGGLKKEQEAMKYLERRECEYD--QKISVDFYKEG--DSLKPAVTGVLVFVSTP 119

Query: 658 E---NKHWLGSAPLPDIAKQILECRGPSGSNVEYL 753
           +   NK++LG APL D+A+QI    GP+G+N +YL
Sbjct: 120 DPVGNKYYLGPAPLEDMARQIATANGPNGNNRDYL 154


>04_04_0043 -
           22330282-22330410,22330484-22330568,22330602-22330724,
           22330839-22330879,22331081-22331137,22331530-22331583,
           22331646-22331650,22332392-22332500
          Length = 200

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 53/171 (30%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
 Frame = +1

Query: 307 WVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKEGITW 486
           WVFGYGSL WNPGF +   L G+V+ + R F+QG                         W
Sbjct: 4   WVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQGQ------------------------W 39

Query: 487 GKAFLVAAE--NSVALPYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIAL-- 654
           G A+ ++ E     AL +L  RE +        +    +P  PA     K+ ++Y+A   
Sbjct: 40  GVAYKISTEQDKQTALEHLEVREKQYDEKIYLDLYMDSSPKTPAV----KNVMVYLATTN 95

Query: 655 -PENKHWLGSAPLPDIAK-----------------QILECRGPSGSNVEYL 753
              N+++LG APL ++AK                 QI    GPSG N EYL
Sbjct: 96  KQSNQNYLGPAPLEEMAKYSTYLTCSIGILQLNLRQIYLAEGPSGPNKEYL 146


>01_06_0054 - 26027072-26028463
          Length = 463

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 592 DGSSQRR-SCSHLICILFW*DKAVLRCFLRPPKTLYPKLFLPCPL 461
           DG+S+RR SCS +   L      ++ CF+R P  L    F P PL
Sbjct: 208 DGTSRRRRSCSRVPAALIVFALGLVLCFVRDPSILQDLRFGPAPL 252


>12_02_0390 -
           18510095-18510148,18510318-18512450,18513018-18513681,
           18514089-18514202,18514835-18514979,18515274-18515331
          Length = 1055

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 76  NLKARDMNINEKKFFSMYAR*NHLTR-LFIILLSHFLFEFKCYYFN 210
           NLKA  + IN  K+F+M  + +   R L +I+L+ +L E+K + F+
Sbjct: 762 NLKALGITINMIKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFS 807


>08_01_1050 - 10649434-10651917
          Length = 827

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 400 RISLRNLLHNQSRIAGIRTLD-SSRGNHNQIPRKV 299
           ++S+ NLL +   I+G+  ++ SS G H QIPR++
Sbjct: 283 QLSVANLLVSMGEISGLEFVNLSSTGLHGQIPREL 317


>06_03_0630 + 22926652-22928133
          Length = 493

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 598 PFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQILECR 723
           P +P  R+D+  + + I  PE+KH+L  A L D+ + + E +
Sbjct: 185 PGMPFLRSDELPSAVSIVSPEHKHYLLLAMLRDLFEDLDELK 226


>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
            5572773-5572949,5573049-5573145,5573575-5573687,
            5573774-5573896,5574004-5574075,5575340-5575432,
            5575564-5575674,5575767-5575889,5576834-5576890,
            5576939-5577022,5577140-5577214,5577418-5577554,
            5577719-5577853,5579029-5579168,5579334-5579399,
            5579732-5579838,5579910-5579990,5580064-5580138,
            5580224-5580325,5581837-5582005,5582090-5582217,
            5582596-5582679,5582779-5582879,5583729-5583882,
            5583964-5584038,5584112-5584262,5584463-5585078,
            5585427-5585487,5585874-5586019,5586104-5586287,
            5586363-5586440,5586603-5586931,5587023-5587199,
            5587571-5587667,5587742-5587897,5587962-5588198,
            5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 628  KDALLYIALPENKHWLGSAPLPDIAKQILEC 720
            K++ + +++PE  + +G APL D   Q+L C
Sbjct: 961  KESHVVLSIPEYNYAIGFAPLMDYNSQLLPC 991


>01_06_0311 -
           28377414-28377623,28377758-28377856,28378116-28378253,
           28378697-28378827,28378920-28379066,28379164-28379293,
           28379625-28379654,28380138-28380416
          Length = 387

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 387 ETFYITSQGLLVF-EPWIPAEGTITK 313
           E F   S+G+ +F + W+P EGT TK
Sbjct: 103 ENFETNSKGVEIFWKSWLPREGTATK 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,791,414
Number of Sequences: 37544
Number of extensions: 466664
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)