Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p11
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.0  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.2  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   6.9  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   9.1  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -2

Query: 581 TTRRSMESFPRRETCPKND--SMRPCTSAKRRCLMPSSRRMEILVRSSVHEIPSIRLQHH 408
           T  +   +F    T PK++  SM+   S +  C++ ++R+ + +   S   IPS RL+ +
Sbjct: 52  TVSQGRVTFAVLPTKPKDEVTSMKANGSRQSSCIVSNARKRQSVHCLSRSPIPSTRLKEN 111

Query: 407 ISR 399
            SR
Sbjct: 112 DSR 114


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 551 RRETCPKNDSMRPCTSAKRRCLMPSSRRMEILVRSSVHEIPS 426
           R+  C KN     C  AKR C++    R +   ++ V  + S
Sbjct: 32  RKIKCDKNRPCHNCFVAKRECIIAGDNRKKRHTKTYVEALES 73


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 409 TSPEHHSSFSRPAAKSTSPQRIGIWEKQ 326
           TSP   SSFS   ++STSP + G    Q
Sbjct: 510 TSPFMGSSFSNMGSRSTSPTKEGFASNQ 537


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 416 GDECLVFHGPNFAPISPFFENSALSSVFWRS 508
           G  CL+  GPN    S F +  ALS++  +S
Sbjct: 762 GVRCLLITGPNMGGKSSFVKQLALSAIMAQS 792


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -2

Query: 572 RSMESFPRRETCPKNDSMRPCTSAKRRCLMPSSRRMEILVRSSVH----EIPSIRLQHHI 405
           R+  + PR     +  S R      RR L+PSSR +   + S V      +P + L  H+
Sbjct: 374 RTGTNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLPILWLSSHV 433

Query: 404 SRASFFFLSTCRKVHVSTAYRNMGKTRVC 318
                F +     + + T+++      +C
Sbjct: 434 ----LFGVCMLSTIFLQTSWQAQAMVAIC 458


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 409 WCWRRMLGISWTELRTNISIL 471
           WCWRR  G+   +L+   +IL
Sbjct: 384 WCWRRFWGMIKHQLKRRDAIL 404


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 281 IYNIIIFYNLYSVIIY*YIKFSCHSFRCHTPPKRLDR 171
           I  +++F +LY++I   +I F   +F  H P     R
Sbjct: 692 IVRVVVFISLYAIIAGVFIYFKDVTFGMHGPASDFHR 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,020
Number of Sequences: 5004
Number of extensions: 59073
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)