Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p11
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.27 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 323 VCTSRIFVALVTLCIYNIII 264
           VCT  +F+AL+  C+ NI++
Sbjct: 313 VCTVFVFMALMEYCLVNIVL 332


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 296 KPQRSGSYKLLFFPYSYTLW 355
           KP RS +      P+S TLW
Sbjct: 550 KPSRSSTLVSFLQPFSNTLW 569


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 455 PISPFFENSALSSVFWRSCMDAYYHFLDMSPGEEM 559
           PI P+      ++V   SC    Y +    PGEEM
Sbjct: 82  PIEPW-HGVLNATVLPNSCYQERYEYFPGFPGEEM 115


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 455 PISPFFENSALSSVFWRSCMDAYYHFLDMSPGEEM 559
           PI P+      ++V   SC    Y +    PGEEM
Sbjct: 82  PIEPW-HGVLNATVLPNSCYQERYEYFPGFPGEEM 115


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 631 IAWAPFHA 608
           I WAPFHA
Sbjct: 296 ICWAPFHA 303


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = +3

Query: 69  KKFRGGLPLTFRGMKNRC-----WPILIDTG*AQKISSKSVK 179
           K+   GLP TFR  KN       +PI +  G    I  KS K
Sbjct: 508 KEDERGLPFTFREQKNLMIELDKFPITLQPG-KNTIEQKSTK 548


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 561 LHRAPCRSGQS 593
           LHRA C SG S
Sbjct: 131 LHRAACHSGSS 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,295
Number of Sequences: 438
Number of extensions: 4264
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)