Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p10
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0409 + 33725704-33725747,33726905-33727706                       28   4.0  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   7.1  
10_08_0415 - 17761594-17762382                                         27   7.1  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   7.1  

>03_06_0409 + 33725704-33725747,33726905-33727706
          Length = 281

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 410 ILIPNKTEKVRSWSDVENG*CLASPHGVGATMAAAVNL*HNAAG----H*ISVVCL 255
           I+IPNK   + S   V +      PH   AT  A V L  N AG    H I V C+
Sbjct: 141 IMIPNKKGSIISLGSVSSVIGGLGPHSYTATKHAVVGLTKNVAGELGKHGIRVNCV 196


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 194 GSRARFQLSGNSGRKHSRCCTS 259
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>10_08_0415 - 17761594-17762382
          Length = 262

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 351 MFSITSWRGGYHGSSSQSVTQCCRPLNFRS 262
           +FS+ +WR  Y G + QS + CC  L+  S
Sbjct: 115 VFSLGAWR--YKGVARQSASMCCGQLDHSS 142


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 189 MESTDPQCHILQHRRPRLPL 130
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,462,379
Number of Sequences: 37544
Number of extensions: 221633
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)