Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p05
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    29   0.72 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.96 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.3  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.9  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   3.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   5.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   5.1  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   6.7  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   6.7  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   6.7  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   6.7  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.9  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   8.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   8.9  

>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 679 LQPHPNNVRHLTENGWSANE 738
           ++PHP+ ++H+ +NGW   E
Sbjct: 214 IEPHPDVLKHMRKNGWMDRE 233


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 618 RKEQEKREKARLEKQKQ-HTIPATTPEQREASYRKWLERKRMQNERRK 758
           +K+QE   + R EKQKQ         +Q+EA   K    +R++ E  K
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEK 699


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 591 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPE 695
           QE FR     +E+EKR  A   K ++ +IPA T E
Sbjct: 251 QEQFRLERENREKEKRRIAAQRKLEEASIPAFTEE 285


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 562 KSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPHPNNVRHLTENGW 726
           KS  +      +LF+ G R  +   + R VW++K N  ++      ++H    GW
Sbjct: 470 KSMKLINNNPSRLFLHGERIHNGDLSNRTVWRSKTNN-AITVEELALQHYQSIGW 523


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 490 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGWRARS-KKNAKRRVWKNKN 666
           LI +  + L+D P H ++  +L+K+    +  +N K+FV+ +         K   W    
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPE 583

Query: 667 NT 672
           NT
Sbjct: 584 NT 585


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 574  VTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH-PNNVRHLTENGW 726
            + ++R+ K       AR  +   +R W +    LSL PH  +N++ L ++G+
Sbjct: 1105 IEKERHTKQLAERLAARLDRCKTQRQWDHVVYALSLLPHKADNIQKLIDDGY 1156


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 624 EQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNER 752
           EQE+ +K  +E++ +    A   EQRE +  K   ++R+Q ER
Sbjct: 811 EQEEAQKRAIEERTRAAREAKEREQREMA-EKLERQRRIQQER 852


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 627 QEKREKARLEKQKQHTIPATTPEQREASYRKWLER 731
           Q K EK+   K K HT  ATT   R +S  K L R
Sbjct: 157 QPKAEKSTTSKSKSHTTTATTHTSR-SSKSKGLPR 190


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
            Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +1

Query: 538  FLRPQLQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 690
            ++          ++  RN    V+  +A +    KRR+ KN+NN    + H
Sbjct: 881  YIDQHFASSKSGISNGRNNNKEVNLTKAENVGIKKRRIMKNENNIYDFEDH 931


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 528 RIVEKCQAHLHDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIHSNPV 382
           R++ K  AH HD  D+ ++ L  Y L       Y +    +L + + PV
Sbjct: 34  RVIIKSNAHKHDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLIAVPV 82


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 105 GHFGDSARNRSDCEL-KRYNHVFDEAGENTHYHSDSDSVASRKSKTRYIN 251
           G F     N S+ ++ K  NHV  +  + T YH+D+  +A       Y+N
Sbjct: 180 GKFKKFVVNHSETDIDKNDNHVSVQTEDGTIYHADTILLAVGAYLNAYLN 229


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 180 GENTHYHSDSDSVASRKSKTRYINPAIYVEKIE 278
           G++T Y    DS+ + KS+  Y+  A+   KIE
Sbjct: 47  GDHTQYAGLRDSLVTYKSENSYVLKALLNAKIE 79


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 415 FRLVEDTLESRPLKNGVELLL*SLCGCGVTSSTQEP 308
           + +V+  L S+  K G+E +  S C CG+ SS  EP
Sbjct: 77  YGVVDPVLASQASKAGLETIFVSGCLCGL-SSVDEP 111


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +3

Query: 603 RQWLARKEQEKREKARLEKQKQHTIPATTPE---QREASYR-KWLE 728
           R+++  K+++K+EK R+E++ +    A   +   Q++ + R KW E
Sbjct: 388 REYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKE 433


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 594 EAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERK 734
           E+F  W A K    + + +++KQ+Q        ++R+   ++ L RK
Sbjct: 492 ESFFDWEAAKVGAPQSREQIQKQRQKAKTKLENQRRDKERQEELRRK 538


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 592 RKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 690
           RKL   G + RS K  + R+WK    +  L  H
Sbjct: 60  RKLHAEGSKERSFKMVQGRIWKKGYESNELTSH 92


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +3

Query: 591 QEAFRQWLARKEQEK--REKARLEKQKQHTIPA----TTPEQREASYRKWLER 731
           +E + +W ARK+Q +   E+ R +K++Q  +       T ++RE   +K  ER
Sbjct: 522 EEEYNKWFARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENER 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,280
Number of Sequences: 5004
Number of extensions: 65048
Number of successful extensions: 255
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)