Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p04
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    30   0.43 
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    28   1.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   4.0  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    26   7.0  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 180 SQPRQNPAFRCLLLTSRLR---VQHSIDHVRLHNRQRGASSLL*IALEPKK 323
           S PR +P  RC L T R+R   +QH ++   +   + G S+ +    EPK+
Sbjct: 70  STPRLSPVHRCALPTPRMRLTSIQHQLEEAAVEGYKSGESNTV---KEPKE 117


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 177 VKSIKNPQTPQSDFNSINAMHTPNIIYMCV 88
           V+ ++NP+TP S F ++  +H+   +  C+
Sbjct: 54  VEILENPRTPNSSFEALYILHSEEKLVDCI 83


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = +1

Query: 376 PENLNRGLDCDVIVAEVRATSHKPDEIYGI------IERLSPGTRKIELFGRPHNVQPNW 537
           P N N  +DCD +   ++      DEI         +++ +P    + +F +  +    +
Sbjct: 675 PFNSNHTIDCDSLQNVIKMLESSIDEISSASYDKDELDKETPSFEAVMIFSQ-ISFLCGF 733

Query: 538 ITLGNQVDGVNLVDPDLIVAFKKRYPD 618
           +    Q  G++ V P+ +V FK  +P+
Sbjct: 734 LNCFIQKKGIHNVTPNNLVIFKNLFPE 760


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 601 KKRYPDGNCMAPPPPDPGL 657
           + RYP+     PPPP PG+
Sbjct: 58  RHRYPETPPSLPPPPSPGI 76


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 409 VIVAEVRATSHKPDE-IYGIIERLSPGTRKIELFG 510
           + +   +  ++ PDE IY  ++++ PGTR + + G
Sbjct: 321 ITIVPFQMMTYLPDEDIYKPVDKVEPGTRTLNISG 355


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 581 GSTRFTPSTWFPRVIQFG*TL 519
           G T F PS W+ +V+  G TL
Sbjct: 306 GQTVFVPSGWYHQVLNIGTTL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,869
Number of Sequences: 5004
Number of extensions: 71344
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)