Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1p04
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 110 1e-24
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 66 3e-11
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 64 1e-10
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 60 1e-09
07_03_1495 + 26983415-26984797 31 1.4
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 5.5
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 29 5.5
04_04_1151 - 31284094-31284204,31284375-31284434,31284518-312845... 29 5.5
04_03_0733 + 19116771-19116957,19117733-19117858,19117946-191180... 29 5.5
09_04_0558 - 18504639-18505718 28 7.3
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 28 7.3
02_03_0210 + 16455879-16456068,16457494-16457648 28 7.3
12_01_0107 - 843820-846335,846400-846511 28 9.7
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 28 9.7
10_08_0898 + 21424379-21424792,21424974-21425723 28 9.7
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 28 9.7
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 110 bits (265), Expect = 1e-24
Identities = 51/87 (58%), Positives = 65/87 (74%)
Frame = +1
Query: 358 VGMKGSPENLNRGLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIELFGRPHNVQPNW 537
VG+KG+P +NR +D DVIVAEVR TS KPDE+Y ++ER+SP TRK+ELF R HN W
Sbjct: 634 VGIKGNPL-VNRNIDTDVIVAEVRETSRKPDEMYPMLERISPRTRKLELFARMHNAHAGW 692
Query: 538 ITLGNQVDGVNLVDPDLIVAFKKRYPD 618
++LGNQ++GV LVD L +K YPD
Sbjct: 693 LSLGNQLNGVRLVDEGLRARYKAAYPD 719
>10_08_0198 + 15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 66.1 bits (154), Expect = 3e-11
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Frame = +1
Query: 385 LNRGLDCDVIVAE--VRATSHKPDEIYGIIERLSPGTRKIELFGRPHNVQPNWITLGNQV 558
++ +D D+I+AE ++ KP+++Y IIE + G R++ELFG HN++P W+TLG +
Sbjct: 845 IHANIDTDIIIAEEPTDGSTKKPEDMYRIIEHFALGRRRLELFGEDHNIRPGWLTLGKGL 904
Query: 559 DGVNLVDPDLIVAFKKR----YPDGNCMAPPPPDPGL 657
N I F R + G PPP P L
Sbjct: 905 SSSNFHKEAYIKNFMDRDGKIWQGGGGRNPPPDAPHL 941
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Frame = +1
Query: 385 LNRGLDCDVIVAE--VRATSHKPDEIYGIIERLSPGTRKIELFGRPHNVQPNWITLGNQV 558
++ +D D+I+AE ++ KP+++Y IIE + G R++ELFG HN++P W+TLG +
Sbjct: 638 IHANIDTDIIIAEEPTDGSTKKPEDMYRIIEHFALGKRRLELFGEDHNIRPGWLTLGKGL 697
Query: 559 DGVNLVDPDLIVAFK----KRYPDGNCMAPPPPDPGL 657
N I F K + G PPP P L
Sbjct: 698 SYSNFNKEAYIKNFADKDGKVWQGGGGRNPPPEAPHL 734
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Frame = +1
Query: 385 LNRGLDCDVIVAE--VRATSHKPDEIYGIIERLSPGTRKIELFGRPHNVQPNWITLGNQV 558
++ +D D+I+A+ ++ KP+++Y IIE + G R++ELFG HN++P W+TLG +
Sbjct: 641 IHANIDTDIIIADEPTDGSTKKPEDMYRIIEHFALGKRRLELFGEDHNIRPGWLTLGKGL 700
Query: 559 DGVNLVDPDLIVAFKKRYPDGNCMA----PPPPDPGL 657
N + F + DG PPP P L
Sbjct: 701 SYSNFNKEAYVKNFADK--DGKVWQGGRNPPPEAPHL 735
>07_03_1495 + 26983415-26984797
Length = 460
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 394 GLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIELF 507
G D E+ A ++ D + G++E+L PGT + E+F
Sbjct: 192 GFSVDERSGEIEALCYESDALEGMVEKLVPGTVESEVF 229
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +3
Query: 438 TQTRRDIRHYREAQSGYKEDRIIRSPT*RSTELDNSGEPGGRREPCGSGPDSRLQETLSG 617
T + R R A SG E S RS + +GE GGRR P G R +E +G
Sbjct: 8 TPSARRAARTRSASSG-GETPTESSGRRRSKQAAVTGERGGRRRPAAGGEGGRDEEGRNG 66
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 625 SCRPDN-VS*RRLSGPDPQGSRRPPGSPELSNSVERYVGDRIIRSS 491
S RP + S RR S P GSRRPP S S+S Y+ R++ S
Sbjct: 2 SSRPSSSASSRRSSSPFSAGSRRPPTSS--SSSAGSYLTGRLMPRS 45
>04_04_1151 -
31284094-31284204,31284375-31284434,31284518-31284595,
31284688-31284812,31284898-31285906,31286513-31286920,
31287323-31287400,31287524-31287934
Length = 759
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 441 QTRRDIRHYREAQSGYKEDRIIRSPT*RSTELDNS 545
+TR+D RH EA +G ++ + +P R +E NS
Sbjct: 632 KTRKDTRHPDEAATGTRDGELNMTPDNRQSEARNS 666
>04_03_0733 +
19116771-19116957,19117733-19117858,19117946-19118061,
19118395-19118483,19118692-19118743,19119361-19119829,
19120985-19121367,19121450-19122132,19122561-19123152,
19123255-19123638,19124106-19124114
Length = 1029
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 388 NRGLDCDVIVAEVRATSHKPDEIYGIIE 471
NRG D +V+ E R+ KP E+Y I++
Sbjct: 61 NRGFDINVLHKEARSRWLKPSEVYYILQ 88
>09_04_0558 - 18504639-18505718
Length = 359
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 656 SPGSGGGGAMQLP---SG*RFLKATIRSGSTRFTPSTWFPRVIQ 534
SP A P G R ++ T+R+G + PS WF V Q
Sbjct: 262 SPEEAAAQASSFPLYFEGPRPIRCTVRAGEMLYLPSMWFHHVSQ 305
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 301 YNRLDAPLCLLCKRTWSIECWTRSRLVSSRHLKA 200
YN D P+C +C T E + VS +H +A
Sbjct: 32 YNEFDQPICRICNVTLKSEALWPAHQVSRKHHEA 65
>02_03_0210 + 16455879-16456068,16457494-16457648
Length = 114
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 507 RSPT*RSTELDNSGEP-GGRREPCGSGPDSRLQETLS 614
R P R T SG P GGRR PC G + E +S
Sbjct: 43 RRPPCRPTPACRSGTPAGGRRGPCAKGQLAHENEQIS 79
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 559 DGVNLVDPDLIVAFKKRYPDGNCMAPPPPDP 651
DG +++D D+I ++ Y GN PPPDP
Sbjct: 615 DGDSILDSDIIDSY---YDQGNPPRYPPPDP 642
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 559 DGVNLVDPDLIVAFKKRYPDGNCMAPPPPDP 651
DG +++D D+I ++ Y GN PPPDP
Sbjct: 701 DGDSILDSDIIDSY---YDQGNPPRYPPPDP 728
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 525 STELDNSGEPGGRREPCGSGPDSRLQET--LSGRQLHGAAAARPGTHLAS 668
S++ +S +P G P GSG SR +++ +G ++ A R TH AS
Sbjct: 234 SSDFPSSNKPSGTARPNGSGGGSRGKKSPGPAGAEVGMEAGVRRCTHCAS 283
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = -1
Query: 180 WVKSIKNPQTPQSDFNSINA----MHTPNI 103
WV ++KN PQSD N I A + TP+I
Sbjct: 519 WVMALKNIDKPQSDTNQITADGLLLKTPDI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,492,016
Number of Sequences: 37544
Number of extensions: 531866
Number of successful extensions: 1760
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -