Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p04
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    28   6.6  
U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AC006722-3|AAK68421.3|  404|Caenorhabditis elegans Hypothetical ...    28   8.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    25   8.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    25   8.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    25   9.0  

>AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical
           protein Y32H12A.7 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 244 CWTRSRLVSSRHLKAGFCLG 185
           CW  SR VSSR+ K G  LG
Sbjct: 13  CWAHSRAVSSRNFKLGIVLG 32


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 460 GIIERLSPGTRKIELFGRPHNVQPNWITLGNQVDGVNLVDPDLIVAF--KKRYPD 618
           GI +R+         FGR  ++ PN+  +    +G +L   +LIV +   +RYPD
Sbjct: 161 GISKRIDLSYPTSNFFGRKFSLIPNFFGISMSPEGQHLNSSNLIVLYFRAERYPD 215


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 543 SGEPGGRREPCGSGPDSRLQETLSGRQLHGAAAARPG 653
           SG PGGR    G GPD   Q+   GR+  G    R G
Sbjct: 341 SGGPGGRGGR-GQGPDFEPQDDFPGRRGSGGPGRRGG 376



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 543 SGEPGGRREPCGSGPDSRLQETLSGRQLHGAAAARPG 653
           SG PGGR    G GPD   Q+   GR+  G    R G
Sbjct: 518 SGGPGGR----GQGPDFGPQDDFPGRRGSGGPEGRDG 550


>U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical
          protein C12D5.9 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 86 TLIICEI-SYSNFVEIKWSPIHTPLRTHT 3
          TL++C + SY NFV+ K + +++PLR  T
Sbjct: 5  TLLVCLVMSYFNFVDSKSNLLNSPLRVCT 33


>AC006722-3|AAK68421.3|  404|Caenorhabditis elegans Hypothetical
           protein Y19D10A.8 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 203 GWVLSGLTGLSQLKTLKHPNQTLIV*TLCIHQILFIC-ALTLIICEISYSN 54
           G +   LTGLS+ + L+H + TL V +   +   F+   L  IIC  +Y+N
Sbjct: 313 GRISDKLTGLSERRCLQHVHYTLTVMSFTAYASQFLSPTLVSIICP-NYTN 362


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 25.0 bits (52), Expect(2) = 8.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 613 PDGNCMAPPPPDP 651
           P G C  PPPP P
Sbjct: 764 PPGGCPPPPPPPP 776



 Score = 21.0 bits (42), Expect(2) = 8.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 634 PPPPDPGL 657
           PPPP PG+
Sbjct: 785 PPPPPPGM 792


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 25.0 bits (52), Expect(2) = 8.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 613 PDGNCMAPPPPDP 651
           P G C  PPPP P
Sbjct: 764 PPGGCPPPPPPPP 776



 Score = 21.0 bits (42), Expect(2) = 8.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 634 PPPPDPGL 657
           PPPP PG+
Sbjct: 785 PPPPPPGM 792


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.0 bits (52), Expect(2) = 9.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 613 PDGNCMAPPPPDP 651
           P G C  PPPP P
Sbjct: 347 PPGGCPPPPPPPP 359



 Score = 21.0 bits (42), Expect(2) = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 634 PPPPDPGL 657
           PPPP PG+
Sbjct: 368 PPPPPPGM 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,315
Number of Sequences: 27780
Number of extensions: 424109
Number of successful extensions: 1160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)