Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p04
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.2  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   5.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.6  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 521 LCGRPNNSIFLVPGLSLSIMPYISSGLCEVALTSATMTSQSRPRFKFSGLPF 366
           LC      +F+V GL + +       +  +++  A + S+ RPR  F G PF
Sbjct: 177 LCVFVAGVVFIVSGLLMLV-----GMVMYISVFKAEVGSKLRPRSSFQGPPF 223


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 446 PTRYTALSRGSVRVQG 493
           PTR+    RGS+ +QG
Sbjct: 31  PTRFRRQERGSIVIQG 46


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 146 WGV*GFLIDLTQSAQTKPSLQV 211
           W   G+ +DL   AQT+ S Q+
Sbjct: 166 WTYDGYTVDLRHLAQTEDSNQI 187


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 80  IICEISYSNFVEIKWSP 30
           ++C+++Y+N     W+P
Sbjct: 60  VVCDVAYNNVNNWLWTP 76


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 448 DEIYGIIERLSPGTRKIELFGRPHNVQPNWI 540
           D +   I  L+P T KI++   P      WI
Sbjct: 86  DRMQKEITALAPSTMKIKIIAPPEKKYSVWI 116


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 117 HTPNIIYMCVNIDYL 73
           +T N+I  CV+I YL
Sbjct: 238 YTVNLIVPCVSISYL 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,708
Number of Sequences: 438
Number of extensions: 5192
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)