Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1p03
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 81 1e-16
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.10
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 1.3
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.3
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.2
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 3.0
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 5.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 6.8
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 9.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 9.0
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 25 9.0
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.0
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 81.4 bits (192), Expect = 1e-16
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 7/233 (3%)
Frame = +3
Query: 54 FTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTV-RKINTAVEELKISTYFENVAKS 230
F +VK R KN + K P+ S + T D ++ T+ RK++ + E+L+ S + ++V
Sbjct: 3 FIVVKRSRKKKNGRGKFPKVSNTITQGDTDLWSQDTLQRKLDNSREKLEYSEFLKSVQSQ 62
Query: 231 VSTVLQSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFNIKKVFV--HDPIFYKSEC 404
+S I + + GLGRI S QL+L + IFN++ F +DP F K +
Sbjct: 63 LSEFKDP--IHKCIILGLGRIHTLTAS-LQLSLFFEIMKIFNLQPRFCSFYDPAFLKDDV 119
Query: 405 TVLQXXXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVNLRNCVLICNS 584
L+ S TL+Y+PHCP L +L + + R+ ++ N+
Sbjct: 120 EFLENKGFCVLPDPPTP----SCLKYTLLYMPHCPTSLYETWLAAYVNDDPRHFIMCGNN 175
Query: 585 FNSLIENQPSRVLKEIVPFIKNIFPYTSEIY----LENNFQYSDIFNDTSLHY 731
++N+PS KEIV N++ ++ Y L F FND S H+
Sbjct: 176 LQLYVDNKPS---KEIVSTYPNVYKMCTKNYYTRLLFPEFPNVYAFNDLSFHF 225
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +3
Query: 36 VIDNDGFTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTVRKINTAVEELKISTYFE 215
V ND TL KS ++++ + P+KSF S S V ++ V E ++ + FE
Sbjct: 841 VSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSK-----SLGVTNVDGTVNEARLRSLFE 895
Query: 216 NVAKSVSTVLQSREIVEIVCF 278
+ K VL +V F
Sbjct: 896 SYGKLYRVVLHPEHEGAVVEF 916
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/83 (21%), Positives = 37/83 (44%)
Frame = +3
Query: 6 KILKKIMSRSVIDNDGFTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTVRKINTAV 185
K L + +S S DN F + K + ++ + +I EK FSF + + + + A
Sbjct: 471 KKLSERLSSSTFDNSKFIRTEDKDTVRSAKLEICEKFFSFADVTDDPTLKDPKHQDLVAA 530
Query: 186 EELKISTYFENVAKSVSTVLQSR 254
++ E+ ++ +L+ R
Sbjct: 531 ANAYMAMLRESYGTEINNLLERR 553
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +3
Query: 156 KTVRKINTAVEELKISTYFENVAKSVSTVLQSREIVEIVCFGLGRIAECNISRYQLALLL 335
K +R + A++ S + V ++ S VL ++E++ G RIA N L
Sbjct: 365 KRLRPFDKALKSFCYSDALDMVLENGSPVLIITMLIELLHVGGLRIALSNRDD------L 418
Query: 336 SLRDIFNIKKVFVHDPIFYKSECTV 410
SL + N + ++ DP F ++ C V
Sbjct: 419 SLTPLINFLRKYIRDPRFSETLCIV 443
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +3
Query: 18 KIMSRSVID--NDGFTLVKSKRSSKNKQTKIPEKS----FSFTNSDIEINISKTVRKINT 179
KI+ R++ D N FT K+ SK ++++ E F+F + I +N ++
Sbjct: 143 KILDRALCDQSNQLFTDYTVKKKSKKNKSQLEENGLNHLFTFQDEKITLNSVVNSISYSS 202
Query: 180 AVEELKISTY 209
EEL I++Y
Sbjct: 203 FFEELLITSY 212
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 591 SLIENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFPMTNY*ILTH 764
S+ P VL E + I ++ YT+ + LEN S F+D L+ P ++ I++H
Sbjct: 380 SIYSRYPMGVLGEKLGNITDVEAYTNALLLENGIS-SSPFSDEVLNCLPPDDW-IISH 435
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 316 YLDILHSAMRPSPKQTISTISLDCKTVLTDLATFSKYVEI 197
Y D +++RPSP + +S SL + ++ ++T+S +E+
Sbjct: 784 YNDDEATSLRPSPIRLLSQKSLASVSSVSSISTYSSSIEL 823
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +3
Query: 141 EINISKTVRKINTAVEELKISTYFENVAKSV-STVLQSREIVE-IVCFGLGRIAECNISR 314
+IN++ ++R + E + E +A S++ R ++C L R C +
Sbjct: 307 QINLAVSIRSMRDIFREESCAVLLEWLADIAGSSICGKRNYFSSVICKELVRPWNCGLHN 366
Query: 315 YQLALLLSLRDIFNIKKVFVHDPIFYKSE 401
L LSLR + + V + P + +E
Sbjct: 367 SDLTFRLSLRSLALPEIVAIDSPDIFLNE 395
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.0
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Frame = +3
Query: 6 KILKKIMSRSVIDNDGFTLVKSKRSSKNKQT-----KIPEKSFSFTNSDIEINISKTVRK 170
KIL + S + + DG L + SS +QT +P + + S + + T+
Sbjct: 422 KILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
Query: 171 INTAVEELKISTYFENVAKSVSTVLQSREIVEIVCFGLGRIAECNISRYQLALLLSLRDI 350
I AV+ ++ E ++ + EI+E F I N+ R A+ L I
Sbjct: 482 IGQAVD--RVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAI 539
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +3
Query: 6 KILKKIMSRSVIDNDGFTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTVRKINTAV 185
KI +K V + D K K + K+ + P+ S N + K K+N +
Sbjct: 773 KIFRKTSFSIVKEIDDELNSKEKSTGKSGKKTSPQSSEDAANKEASSVPLKVPDKVNIEI 832
Query: 186 EELKISTY 209
EE ++ Y
Sbjct: 833 EEKDLTKY 840
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +3
Query: 600 ENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFND 716
++ P ++ + P+ ++F E+ +EN F+Y+ I++D
Sbjct: 213 KDSPILIVDQFFPWKGHLFDIEKELGIENQFKYA-IYSD 250
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 73 FDFTKVKPSLSITDLDIIFFRI 8
FD+ ++KPS+S + IFF+I
Sbjct: 599 FDYIELKPSISEKESKAIFFQI 620
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 549 VNLRNCVLICNSFNSLIENQPSRVLKEIVPFIKNIFPYTSEIYLE 683
VN ++ N + +I + +R+ + VPF KN+ P++ E L+
Sbjct: 812 VNKDLLLVFGNMEDRVIIHSVTRINENSVPFNKNLLPHSLEFILK 856
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,255
Number of Sequences: 5004
Number of extensions: 68292
Number of successful extensions: 215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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