Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1p03
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 40 0.002
05_01_0134 - 904136-904996 37 0.015
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 37 0.015
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 31 1.0
08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137... 30 1.8
03_06_0069 - 31449319-31450368 30 1.8
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 28 7.1
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 213 ENVAKSVSTVLQSREIVEIVCFGLGRIAECNISRYQL--ALLLSLRDIFNIKKVFVHDP 383
E+V+ +S++L + E +++V +GLG S+YQL ALLL +IF I + ++DP
Sbjct: 353 ESVSSHISSMLGAHECIQLVIYGLGSFEFDVKSQYQLAFALLLKADNIFPIGDIEIYDP 411
Score = 38.3 bits (85), Expect = 0.007
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +3
Query: 246 QSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFN--IKKVFVHDPIFYKSECTVLQX 419
+ RE + +V + LG + R++LALLL LRD F + V V DP E ++
Sbjct: 54 RGRERLRVVAYRLGGMRYSWAPRFRLALLLLLRDKFPELVGAVEVVDPTVAPVERRAMEE 113
Query: 420 XXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVN-LRNCVLICNSFNSL 596
V TL+++P+ + N L NW + L V++ +SF+++
Sbjct: 114 LGCVVTASPALCLVV---EQPTLIFMPYADRVFFENLLTLNWTPDQLGKIVVLGHSFSAM 170
Query: 597 IE 602
++
Sbjct: 171 VK 172
>05_01_0134 - 904136-904996
Length = 286
Score = 37.1 bits (82), Expect = 0.015
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Frame = +3
Query: 279 GLGRIAECNISRYQLALLLSLR-DIFNIKKVFVH----DPIFYKSECTVLQXXXXXXXXX 443
G+G SR QLAL LR D+ + + H DP+ +EC
Sbjct: 101 GVGSFENSPSSRLQLALAALLRRDLLLLPESSAHADLFDPVLSAAECAAAAALGFTVPGV 160
Query: 444 XXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNW--GVNLRNCVLICNSF-NSLIENQPS 614
+ TL Y+PHC L + L +NW LR+ ++ NSF N I+ + +
Sbjct: 161 NDGCRRRADEP--TLFYMPHCEASLYDALLAANWEPPSQLRHVCVLGNSFRNYAIQAEEN 218
Query: 615 R 617
R
Sbjct: 219 R 219
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +3
Query: 213 ENVAKSVSTVLQSREIVEIVCFGLGRIAECNISRYQLALLLSLRD--IFNIKKVFVHDP 383
+++ +S++L + E +++V +G+G S+YQ+A L L++ IF I + ++DP
Sbjct: 435 QSICSHISSMLGAHECIQLVVYGIGSFEFDVKSQYQIAFALLLKEDNIFPISDIEIYDP 493
Score = 35.5 bits (78), Expect = 0.047
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Frame = +3
Query: 246 QSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFN--IKKVFVHDPIFYKSECTVLQX 419
+ E + +V + LG + R++LA+LL LRD F + + V DP E ++
Sbjct: 144 RGHERLRVVAYRLGGLRYSWAPRFRLAVLLLLRDKFPELVGAIEVVDPTVAPVERRAMEE 203
Query: 420 XXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVN-LRNCVLICNSFNSL 596
V TL+++P+ + N L NW + L V++ +SF+++
Sbjct: 204 LGCIVTTSPALCLVVEEP---TLIFMPYADRVFFENLLILNWSPDKLGKIVVLGHSFSTM 260
Query: 597 IE 602
++
Sbjct: 261 VK 262
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 561 NCVLICNSFNSLIE-NQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFP 737
+C+ C+ S+++ N+ + E++ KNI PY + L NN ND S H F
Sbjct: 620 DCIKACSPLQSMVDTNEEMLLAHEVMNHTKNIKPYHVDDSLRNN-------NDISFHPFK 672
Query: 738 MTN 746
+++
Sbjct: 673 VSD 675
>08_01_0167 +
1370733-1371316,1371590-1371765,1371865-1372101,
1372377-1372495,1372530-1372906,1373012-1373117,
1373520-1373606,1375367-1375421,1375775-1376311,
1377669-1377739,1377899-1377938,1379560-1379852
Length = 893
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 561 NCVLICNSFNSLIENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFPM 740
N + C S + I N + + + +I + PY E YL + + +++FP
Sbjct: 620 NAPVECTSLITRIANGHGVITTDQIEYIFTVHPYVDETYLMQGHILKHGADGSLIYFFPC 679
Query: 741 TN 746
TN
Sbjct: 680 TN 681
>03_06_0069 - 31449319-31450368
Length = 349
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 361 LILKISLSDRRSANWYLDILHSAM----RPSPKQTISTISLDCKTVLTDL 224
L L S S +A++Y D LH+ + RP ++T SL C T +T L
Sbjct: 245 LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYDVATASLPCTTAVTSL 294
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +3
Query: 96 TKIPEKSFSFTNSDIEINISKTVRKINTAVEELKISTYFENVAKSVSTVLQSREIVEIVC 275
TKI +F ++ +++++SK + V L +T ++A VST S V+
Sbjct: 320 TKIDRMLEAFRHTKVDLSLSKDSTR---DVAALSANTDPTSIALEVSTEAGSTNHVDTAK 376
Query: 276 FGLGRIAECNI 308
G+G EC++
Sbjct: 377 LGMGTTIECSM 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,565,628
Number of Sequences: 37544
Number of extensions: 338005
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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