Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p03
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    31   1.2  
U64847-10|AAB04877.2|  404|Caenorhabditis elegans Hypothetical p...    30   1.6  
U64847-9|AAQ23119.1|  426|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40419-5|AAA81426.1|  165|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC024828-1|AAF60808.2|  419|Caenorhabditis elegans Hypothetical ...    29   2.8  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   6.4  
Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z81082-1|CAB03094.2|  291|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determinati...    28   8.4  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 597 IENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHY 731
           I N PS  LK+     KN+ P  +++  E   Q +  F+ ++LH+
Sbjct: 92  INNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSALHH 136


>U64847-10|AAB04877.2|  404|Caenorhabditis elegans Hypothetical
           protein F08F3.9a protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 51  GFTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTVRK 170
           G  L +S+R      TK+P   F F + D    ISKT ++
Sbjct: 277 GLKLTRSRRHCTTSVTKLPSVKFGFKSIDSVDEISKTAKR 316


>U64847-9|AAQ23119.1|  426|Caenorhabditis elegans Hypothetical
           protein F08F3.9b protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 51  GFTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTVRK 170
           G  L +S+R      TK+P   F F + D    ISKT ++
Sbjct: 277 GLKLTRSRRHCTTSVTKLPSVKFGFKSIDSVDEISKTAKR 316


>U40419-5|AAA81426.1|  165|Caenorhabditis elegans Hypothetical
           protein C27F2.6 protein.
          Length = 165

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 268 ISTISLDCKTVLTDLATFSKYVEIFNSSTAVFIFLTVFDMFISISLLVNENDFSGILVCL 89
           +S++ L   ++L+  A FS    I   S+A F F+T+F +     +  N   FSG   CL
Sbjct: 23  LSSLLLCSISLLSSSALFSSIENISYQSSAYFGFMTIFGISFGDIVPTNLVWFSG--YCL 80

Query: 88  FF 83
           FF
Sbjct: 81  FF 82


>AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical
           protein Y6B3B.3 protein.
          Length = 995

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 287 TKSKTNYFNYFSGLQNGTHGFSNVLKIC*NF*FLNSRIYFPHSFRYVYFYITVG 126
           T++ +    + SGL NG H FSN+LK   N  FL  RI     F +  F+   G
Sbjct: 145 TETSSLIRQHTSGLWNGYHDFSNLLKDIKNKFFL--RIILRVFFHFTCFFSHAG 196


>AC024828-1|AAF60808.2|  419|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.1 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 10/193 (5%)
 Frame = +3

Query: 39  IDNDGFTLVKSKRSSKNKQTKIPEKSFSFTNSDIEINISKTVRKINTAVEELKISTYFEN 218
           +++DGFTLV  +++ K          F  T +   I +  T+  I  A+E  K       
Sbjct: 183 MEDDGFTLVTGRKAGKQ------SAKFKKTENGKHIRVDGTLESIEKAMELAKNGILKSG 236

Query: 219 VAKSVSTVLQ-----SREIVEIVCFGLGRI-AECNISRYQLALLLSLRDIFNIKKVFVHD 380
           +   +   LQ      ++I  I   G G          +QLAL L + + F    +F  +
Sbjct: 237 LGTWLHHKLQLLISPHQKIQTIYVIGNGHFDGSTEPGAHQLALFLEISEQFQCPIIF-QE 295

Query: 381 PIFYKSECTVLQXXXXXXXXXXXXXXYVISDSGV----TLVYLPHCPKQLTNNFLWSNWG 548
           P+   +E   L+               +  +  +    ++    H   ++ N FL  N G
Sbjct: 296 PVCSATELKWLESKNVEIRREMDAKIDICEEKSISSMLSIFAFIHGEHEIFNEFLEFNAG 355

Query: 549 VNLRNCVLICNSF 587
             + N ++I N +
Sbjct: 356 -KIDNLIVIGNDY 367


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
            protein) homologfamily member protein.
          Length = 1473

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 57   TLVKSKRS-SKNKQTKIPEKSFSFTNSDIEINISKTVRKINTAVE----ELKISTYFENV 221
            TLVK   S SKN    I +K   +     E  IS  VRK+N   E    EL+I+    N+
Sbjct: 1183 TLVKKHTSQSKNAHLDISKKDALYVGFVPEGIISHKVRKLNVPFEGELQELRINELPINL 1242

Query: 222  AKSVS-TVLQSREIVEI 269
               VS  V+   +++EI
Sbjct: 1243 ISGVSKEVMDKVDVMEI 1259


>Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical
           protein LLC1.1 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +3

Query: 576 CNSFNSLIENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFPMTNY 749
           C+   +LI+N PS  LK+  PF+  I  +  ++  ENN QY      T++H   +++Y
Sbjct: 412 CSVMFALIQNDPSEGLKKREPFV-TIGMHVMKV--ENNRQYR---VHTAMHPIAISDY 463


>Z81082-1|CAB03094.2|  291|Caenorhabditis elegans Hypothetical
           protein F42G4.5 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -2

Query: 361 LILKISLSDRRSANWYLDILHSAMRPSPKQTISTISLDCKTVLTDL--ATFSKYVEIFNS 188
           ++ ++S   RRS       L S   PSP+ T S     C+ +L     A      ++ N 
Sbjct: 45  ILRQLSQLSRRSIESLSSTLSSPRTPSPRATFSDYPNPCELILLSALQAHIISGDDMRNC 104

Query: 187 STAVFIFLTVFDMFISISLLVNENDFSGIL 98
           ST +   LT+ +    I+    E D SGI+
Sbjct: 105 STEIQA-LTLCEKQKLINFFKPEGDASGII 133


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 651 IFPYTSEIYLENNFQYSDIFNDTSLHYFPMTN 746
           I PY   I L N  +   + ++ SLHYF M+N
Sbjct: 79  IIPYRYRIQLSNMPKSPQLCSNLSLHYFCMSN 110


>U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determination
           protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +3

Query: 576 CNSFNSLIENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFPMTNY 749
           C+   +LI+N PS  LK+  PF+  I  +  ++  ENN QY      T++H   +++Y
Sbjct: 412 CSVMFALIQNDPSEGLKKREPFV-TIGMHVMKV--ENNRQYR---VHTAMHPIAISDY 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,844,450
Number of Sequences: 27780
Number of extensions: 357295
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)