Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p03
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 501 HCPKQLTNNFLWSNWGVNLRNCVLICNSFNSLIENQPSRVLKEIV 635
           H  ++  NN+L+   G+    C  +  +F  +  N+   +LKEI+
Sbjct: 398 HLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEIL 442


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 363 KVFVHDPIFYK 395
           +V VHDP+FY+
Sbjct: 426 EVAVHDPVFYQ 436


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 516 LTNNFLWSNWGVNLRNCVLICNSFNSLIE 602
           LT N    N+ ++   C+L   S+N  ++
Sbjct: 98  LTKNLEIKNYNIDWDKCILSSESYNPQVD 126


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 370 SFTIQFSINRNAQCSKNSALML*RKIMKAI 459
           S+ IQF  N+N +  +   +ML  +  K I
Sbjct: 304 SYLIQFFANKNQKFYERGIMMLPERWQKVI 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,658
Number of Sequences: 438
Number of extensions: 4526
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)