Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1p02
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    29   0.87 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   1.1  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    27   2.6  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   4.6  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   4.6  

>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 248 GVQAARPACGRARDCVAGHHLNDEFFFTVHGQNLVINFSE 367
           G +AA  AC  A + V G H ND+   T H +N    F E
Sbjct: 126 GTKAAM-ACTEAVETVIGGHYNDQLRETAHLENKAPEFKE 164


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -2

Query: 685  TQVDERQQSTSLDPERHASGPFEVKSQEVLEAPQVQRGERAGRRVLEGQALEDGDVEGSE 506
            T  D  Q+  S+D  +  S  FEV     +    + RG +   RVL  + +     E S 
Sbjct: 817  TSADALQKYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMPNRVLTPEDINQVRAERSF 876

Query: 505  SVRQRVGS 482
            S R+  G+
Sbjct: 877  SSRRNNGN 884


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = -2

Query: 556 RVLEGQALEDG-----DVEGSESVRQRVGSDAAPSKRHVEDARA 440
           RV E Q L D      D E +ES+RQ + S  +  +RH+E+ RA
Sbjct: 68  RVSEIQQLRDELKICKDQERAESIRQTLKSLLSKMERHLEEERA 111


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 703 AVELQHTQVDERQQSTSLDPERHASGPFEVKSQEVLEAPQVQRGERAGR 557
           ++ L+   V    Q+T+  P+R A+ P E  S        ++R  R+ R
Sbjct: 221 SMTLRKRSVSPSSQNTARSPKRMATEPIEPASSPAASNQAIRRSSRSRR 269


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 468 RSVTLRTRAPPSNDGIPAPPSATPSGHS 385
           RS+T  ++  PS      P  +TPSG S
Sbjct: 106 RSITAPSKTEPSTPSTEKPEPSTPSGES 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,510
Number of Sequences: 5004
Number of extensions: 26267
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)