Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o24
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...   132   3e-32
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   1.9  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   1.9  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score =  132 bits (320), Expect = 3e-32
 Identities = 67/183 (36%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
 Frame = +2

Query: 149 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 328
           ITSA G+++LLDE   E++  AL ++   +D+ WP           ++ED  F + +LAA
Sbjct: 12  ITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPERELAA 71

Query: 329 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVDSSA 508
           LV SKVYY+LG ++++L +AL +G  F  +  ++Y +T I K ID +  K   L+ +  A
Sbjct: 72  LVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCIDMFIHKSAELYKNPKA 131

Query: 509 ELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIM--KSDDI-PGMLQYA 679
           + +D RL  +V  +FQ+C    ++R  LG+A+E  R+DI E  +   K  D+ P +L+ A
Sbjct: 132 DPLDERLSGVVEGIFQKCYAKNEWRHVLGIAIEAHRLDIIEYILNADKETDLKPYVLELA 191

Query: 680 FTV 688
            TV
Sbjct: 192 MTV 194


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 274  LDRFRYFWPKLIDDVVQPLQSEFFNFRHGLIEQGNNPRGR 155
            LD F + W K++DD+ + +  E  + R  +      PRG+
Sbjct: 1195 LDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRTKKKPRGK 1234


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = -1

Query: 607 LQC*AKRLSVLSIFKAPLEHAIHDVFKTVIN*FSRTIHKESLSLLSVKVDRFCDRSV 437
           ++C  K L+++ + KAPL      V+K + +  SR   KES++L++   + F  R+V
Sbjct: 1   MKCSNKVLTIIKLLKAPLAECDPTVYKILESEKSR--QKESIALIA--SENFTSRAV 53


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 389 LGAGDLFDVNARNEYVDTTIAKAIDFYTQK 478
           +G G   D +A+  YVDT    A++  TQ+
Sbjct: 280 IGCGRYHDAHAKQHYVDTAHCYAMELETQR 309


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 149 CSFFFVILFNLFKMGSLSFYYNFSFK 72
           C FF+  LF+ F     S ++NF F+
Sbjct: 109 CFFFYFSLFSFFSFLFTSLHFNFFFR 134


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 78  RKVVIKR----QRTHFK*VK*NNEEK*TSRLPRGLFPCSMSPCLK 200
           +KV+IKR    +  H   V  NN+EK T  L   +F   M PC K
Sbjct: 109 QKVLIKRPEGCRELHSCNVLMNNDEKNTLSLTPSIFLSVMKPCPK 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,383
Number of Sequences: 5004
Number of extensions: 54044
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)