Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o17
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0326 + 4321219-4321391,4321497-4321577,4321787-4321842,432...    28   6.6  

>04_01_0326 +
           4321219-4321391,4321497-4321577,4321787-4321842,
           4323318-4323379,4323743-4323926,4324237-4324283
          Length = 200

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 159 LSELIVNCIIV*ETFSIIIFKAFPENRGYNCEPN 58
           LSE  +  + V E F ++ F   P +R  NC PN
Sbjct: 145 LSETAIEFVRVVEGFVVLAFPNVPSDRKENCVPN 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,085
Number of Sequences: 37544
Number of extensions: 359471
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)