Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1o17
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048120-1|AAH48120.3| 652|Homo sapiens chromosome 12 open read... 32 1.8
X58674-1|CAB37830.1| 350|Homo sapiens C5a anaphylatoxin recepto... 30 9.7
X57250-1|CAA40530.1| 350|Homo sapiens C5A receptor protein. 30 9.7
M62505-1|AAA62831.1| 350|Homo sapiens C5a anaphylatoxin recepto... 30 9.7
DQ314804-1|ABC40723.1| 478|Homo sapiens opsin 4 (melanopsin) pr... 30 9.7
BT007358-1|AAP36022.1| 350|Homo sapiens complement component 5 ... 30 9.7
BC113558-1|AAI13559.1| 478|Homo sapiens opsin 4 (melanopsin) pr... 30 9.7
BC008982-1|AAH08982.1| 350|Homo sapiens complement component 5a... 30 9.7
AY221091-1|AAO65969.1| 350|Homo sapiens complement component 5a... 30 9.7
AF147788-1|AAF24978.1| 478|Homo sapiens melanopsin protein. 30 9.7
AB065730-1|BAC05951.1| 472|Homo sapiens seven transmembrane hel... 30 9.7
>BC048120-1|AAH48120.3| 652|Homo sapiens chromosome 12 open reading
frame 40 protein.
Length = 652
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 447 EQCFCSAKS-STESETRLIEKIRAQNRQTTVGEIQLTNYYIP*WIKIAHSKLYKFFDKL 620
+ CF S+ +E E ++ ++I NR T + ++ N+Y+ K++ ++ K DK+
Sbjct: 489 DSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDKI 547
>X58674-1|CAB37830.1| 350|Homo sapiens C5a anaphylatoxin receptor
protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 587 RNFNPLWYVVVRQLNFTD-RSLPILSTNLLNESRFRFGGRFCT 462
R N +W++ + +F +LPIL T+++ + FGG C+
Sbjct: 68 RTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACS 110
>X57250-1|CAA40530.1| 350|Homo sapiens C5A receptor protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 587 RNFNPLWYVVVRQLNFTD-RSLPILSTNLLNESRFRFGGRFCT 462
R N +W++ + +F +LPIL T+++ + FGG C+
Sbjct: 68 RTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACS 110
>M62505-1|AAA62831.1| 350|Homo sapiens C5a anaphylatoxin receptor
protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 587 RNFNPLWYVVVRQLNFTD-RSLPILSTNLLNESRFRFGGRFCT 462
R N +W++ + +F +LPIL T+++ + FGG C+
Sbjct: 68 RTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACS 110
>DQ314804-1|ABC40723.1| 478|Homo sapiens opsin 4 (melanopsin)
protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.7
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 118 GFLYNYTIHYQFG*YTNILNARNLHTYSCAWNDFLVL*MQIPSFVQASNNTYLDVYYKWT 297
G L N T+ Y F ++ N+ + A +DFL+ Q P F +S Y + T
Sbjct: 84 GMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSS--LYKQWLFGET 141
Query: 298 NCDTFIFWEGAVF 336
C+ + F GA+F
Sbjct: 142 GCEFYAFC-GALF 153
>BT007358-1|AAP36022.1| 350|Homo sapiens complement component 5
receptor 1 (C5a ligand) protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 587 RNFNPLWYVVVRQLNFTD-RSLPILSTNLLNESRFRFGGRFCT 462
R N +W++ + +F +LPIL T+++ + FGG C+
Sbjct: 68 RTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACS 110
>BC113558-1|AAI13559.1| 478|Homo sapiens opsin 4 (melanopsin)
protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.7
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 118 GFLYNYTIHYQFG*YTNILNARNLHTYSCAWNDFLVL*MQIPSFVQASNNTYLDVYYKWT 297
G L N T+ Y F ++ N+ + A +DFL+ Q P F +S Y + T
Sbjct: 84 GMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSS--LYKQWLFGET 141
Query: 298 NCDTFIFWEGAVF 336
C+ + F GA+F
Sbjct: 142 GCEFYAFC-GALF 153
>BC008982-1|AAH08982.1| 350|Homo sapiens complement component 5a
receptor 1 protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 587 RNFNPLWYVVVRQLNFTD-RSLPILSTNLLNESRFRFGGRFCT 462
R N +W++ + +F +LPIL T+++ + FGG C+
Sbjct: 68 RTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACS 110
>AY221091-1|AAO65969.1| 350|Homo sapiens complement component 5a
receptor 1 protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 587 RNFNPLWYVVVRQLNFTD-RSLPILSTNLLNESRFRFGGRFCT 462
R N +W++ + +F +LPIL T+++ + FGG C+
Sbjct: 68 RTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACS 110
>AF147788-1|AAF24978.1| 478|Homo sapiens melanopsin protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.7
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 118 GFLYNYTIHYQFG*YTNILNARNLHTYSCAWNDFLVL*MQIPSFVQASNNTYLDVYYKWT 297
G L N T+ Y F ++ N+ + A +DFL+ Q P F +S Y + T
Sbjct: 84 GMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSS--LYKQWLFGET 141
Query: 298 NCDTFIFWEGAVF 336
C+ + F GA+F
Sbjct: 142 GCEFYAFC-GALF 153
>AB065730-1|BAC05951.1| 472|Homo sapiens seven transmembrane helix
receptor protein.
Length = 472
Score = 29.9 bits (64), Expect = 9.7
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 118 GFLYNYTIHYQFG*YTNILNARNLHTYSCAWNDFLVL*MQIPSFVQASNNTYLDVYYKWT 297
G L N T+ Y F ++ N+ + A +DFL+ Q P F +S Y + T
Sbjct: 84 GMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSS--LYKQWLFGET 141
Query: 298 NCDTFIFWEGAVF 336
C+ + F GA+F
Sbjct: 142 GCEFYAFC-GALF 153
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,806,638
Number of Sequences: 237096
Number of extensions: 2047476
Number of successful extensions: 4014
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4014
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -