Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o17
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-3|AAC48143.1|  337|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U58735-3|AAC48143.1|  337|Caenorhabditis elegans Hypothetical
           protein F20B4.2 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 409 LNLRGFANTNPSKSSAFAVQNLPPNRKRDSLRR 507
           L  R    T P  SS  A  NLPP R RD + R
Sbjct: 248 LGYRDPHTTTPDSSSDHAAANLPPGRTRDYIPR 280


>Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical
           protein F44G4.6 protein.
          Length = 173

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 165 RVLSELIVNCIIV*ETFSIIIFKAFPENRGYNC 67
           R +S L++NC+I    +S +  K  P+N+ Y+C
Sbjct: 130 RFISFLVLNCVIS-IVYSCLCLKKSPKNQAYDC 161


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 575 PLWYVVVRQLNFTDRSLPILSTNLLNESRFRFGGRF 468
           PLW +  R L +   +LP    +++NE R++   +F
Sbjct: 213 PLWVINERGLEYIRNNLPAACEDIINEGRYKAMEKF 248


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -1

Query: 453  TALARVSVSKSSQVEPVSSPTRPGVAGIAP*TTSKQVGEKNRPFP--KNKGIT--ICPFV 286
            +A+   ++S  +   PV+ PT    + IAP TT  Q  ++ RP P     GIT  + P  
Sbjct: 1417 SAIPPWAISSKTLAPPVAPPTVTVPSNIAPSTTGHQ-SQQTRPTPTTHRPGITPPLAPKT 1475

Query: 285  VY 280
            +Y
Sbjct: 1476 IY 1477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,302
Number of Sequences: 27780
Number of extensions: 352351
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)